Subcellular Localization
min:
: max
Winner_takes_all: extracellular, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
extracellular:
28052459
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY70980 | Canola | cytosol | 28.88 | 99.17 |
| CDX96828 | Canola | cytosol | 28.4 | 97.5 |
| CDX83963 | Canola | cytosol | 28.16 | 96.67 |
| AT2G32070.1 | Thale cress | nucleus | 42.72 | 64.0 |
| CDY64914 | Canola | nucleus | 42.72 | 63.77 |
| CDY12234 | Canola | nucleus | 42.48 | 63.41 |
| CDY63973 | Canola | nucleus | 41.26 | 62.04 |
| CDY53227 | Canola | nucleus | 41.02 | 61.68 |
| CDX87343 | Canola | cytosol | 41.02 | 61.45 |
| CDY33367 | Canola | cytosol, extracellular | 67.72 | 61.45 |
| GSMUA_Achr3P04600_001 | Banana | nucleus | 36.41 | 61.22 |
| CDY39943 | Canola | cytosol | 40.78 | 61.09 |
| Solyc06g068410.2.1 | Tomato | nucleus | 37.14 | 60.71 |
| PGSC0003DMT400036620 | Potato | nucleus | 38.84 | 58.39 |
| Solyc03g117030.1.1 | Tomato | nucleus | 38.84 | 58.39 |
| PGSC0003DMT400073328 | Potato | nucleus | 38.59 | 58.24 |
| GSMUA_Achr9P13270_001 | Banana | cytosol | 38.59 | 57.82 |
| KRH47360 | Soybean | nucleus | 38.59 | 57.4 |
| PGSC0003DMT400058833 | Potato | cytosol | 38.11 | 57.3 |
| VIT_11s0037g00100.t01 | Wine grape | nucleus | 37.38 | 57.04 |
| VIT_09s0070g00060.t01 | Wine grape | nucleus | 37.86 | 56.93 |
| KRH52356 | Soybean | nucleus | 37.62 | 56.78 |
| KRH44539 | Soybean | cytosol | 38.35 | 56.23 |
| Solyc11g045130.1.1 | Tomato | cytosol | 37.38 | 56.2 |
| KRH61689 | Soybean | nucleus | 36.89 | 55.68 |
| VIT_04s0008g05850.t01 | Wine grape | nucleus | 36.89 | 55.68 |
| CDX70376 | Canola | nucleus | 35.92 | 53.62 |
| GSMUA_Achr4P04150_001 | Banana | cytosol | 34.95 | 53.53 |
| CDX78405 | Canola | nucleus | 35.92 | 53.24 |
| Os09t0416800-01 | Rice | cytosol | 36.16 | 53.21 |
| GSMUA_Achr4P04220_001 | Banana | nucleus | 34.71 | 53.16 |
| TraesCS5A01G225900.1 | Wheat | cytosol | 35.92 | 53.05 |
| TraesCS5D01G233200.1 | Wheat | cytosol | 35.92 | 53.05 |
| TraesCS5B01G224400.1 | Wheat | cytosol | 35.92 | 53.05 |
| EER96736 | Sorghum | nucleus | 35.19 | 51.97 |
| TraesCS6D01G341500.1 | Wheat | cytosol | 36.41 | 51.9 |
| TraesCS6B01G391400.1 | Wheat | cytosol | 36.41 | 51.9 |
| TraesCS6A01G358700.1 | Wheat | cytosol | 36.41 | 51.9 |
| HORVU6Hr1G085410.1 | Barley | cytosol | 36.41 | 51.9 |
| EES05957 | Sorghum | nucleus | 36.16 | 51.74 |
| GSMUA_Achr4P11450_001 | Banana | cytosol | 33.74 | 51.67 |
| CDX69796 | Canola | nucleus | 34.71 | 51.44 |
| CDX97069 | Canola | nucleus | 34.95 | 51.43 |
| Zm00001d020486_P001 | Maize | extracellular | 34.71 | 51.25 |
| Zm00001d052031_P001 | Maize | cytosol | 35.19 | 50.52 |
| Os02t0796300-01 | Rice | cytosol | 36.16 | 50.51 |
| GSMUA_Achr9P22440_001 | Banana | cytosol | 30.83 | 50.4 |
| CDY35049 | Canola | nucleus | 33.74 | 50.36 |
| KRH28796 | Soybean | nucleus | 11.89 | 50.0 |
| GSMUA_Achr2P05120_001 | Banana | cytosol | 29.61 | 47.47 |
| EES13910 | Sorghum | nucleus | 32.77 | 47.2 |
| TraesCS7D01G291400.1 | Wheat | nucleus | 33.5 | 46.94 |
| TraesCS7B01G198900.1 | Wheat | nucleus | 33.25 | 46.6 |
| TraesCS7A01G297000.1 | Wheat | nucleus | 33.25 | 46.6 |
| Zm00001d050433_P001 | Maize | nucleus | 31.55 | 46.43 |
| Os08t0440300-03 | Rice | cytosol | 32.04 | 45.83 |
| HORVU7Hr1G067520.3 | Barley | nucleus | 33.25 | 45.67 |
| CDY47299 | Canola | nucleus | 29.13 | 44.12 |
| CDY35673 | Canola | nucleus | 28.4 | 43.33 |
| CDY09125 | Canola | nucleus | 28.16 | 42.96 |
| CDX88806 | Canola | cytosol | 29.61 | 42.81 |
| CDY08688 | Canola | cytosol | 28.88 | 42.65 |
| CDX70991 | Canola | cytosol, nucleus, plastid | 12.86 | 41.73 |
| CDX98586 | Canola | nucleus | 28.64 | 41.7 |
| CDX92371 | Canola | nucleus | 28.64 | 41.7 |
| GSMUA_Achr1P10040_001 | Banana | nucleus | 27.91 | 41.22 |
| Zm00001d018378_P001 | Maize | nucleus | 7.77 | 40.51 |
| Zm00001d032158_P002 | Maize | plastid | 33.01 | 34.17 |
| CDX73277 | Canola | cytosol | 22.82 | 29.1 |
| CDY26919 | Canola | cytosol | 22.57 | 28.88 |
| CDY09974 | Canola | cytosol, mitochondrion, nucleus | 20.87 | 23.43 |
| CDY06214 | Canola | cytosol, mitochondrion, nucleus | 20.63 | 23.16 |
| CDY09972 | Canola | cytosol, mitochondrion, nucleus | 21.12 | 23.08 |
| CDY22569 | Canola | cytosol | 21.36 | 19.47 |
| CDY12276 | Canola | cytosol | 16.5 | 19.21 |
Protein Annotations
| MapMan:17.1.3.1.13 | Gene3D:3.30.1330.30 | Gene3D:3.30.420.10 | GO:A0A078FG63 | UniProt:A0A078FG63 | EnsemblPlants:CDY12236 |
| ProteinID:CDY12236 | ProteinID:CDY12236.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003735 | GO:GO:0005198 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005840 |
| GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0019538 |
| GO:GO:0030529 | EnsemblPlantsGene:GSBRNA2T00061273001 | InterPro:IPR029064 | InterPro:IPR036397 | InterPro:L30e-like | PFAM:PF01248 |
| PFAM:PF04857 | PRINTS:PR00972 | ScanProsite:PS01189 | PANTHER:PTHR10797 | PANTHER:PTHR10797:SF0 | InterPro:RNaseH-like_sf |
| InterPro:RNaseH_sf | InterPro:RNase_CAF1 | InterPro:Ribosomal_L7Ae/L30e/S12e/Gad45 | InterPro:Ribosomal_S12e | SUPFAM:SSF53098 | SUPFAM:SSF55315 |
| UniParc:UPI0004EF29B4 | SEG:seg | : | : | : | : |
Description
BnaC04g12660D40S ribosomal protein S12 [Source:UniProtKB/TrEMBL;Acc:A0A078FG63]
Coordinates
chrLK032018:+:674774..677988
Molecular Weight (calculated)
46186.9 Da
IEP (calculated)
6.022
GRAVY (calculated)
-0.061
Length
412 amino acids
Sequence
(BLAST)
(BLAST)
001: MTMFLQGDSI QIREVWSDNL EAEMDLIREV VDDFPYVSMD TEFPGIVFRP LENIKTITEY HYKTLRTNVN LMKMIQLGLT FSNESGNLPT CGSDKYCIWQ
101: FNFCDFDPVC SISNPESIKL LRDSGIDFKK NYEKGVHSKR FAELLLTSGV VLNENVHWVT FHGVYDLAYL LKVLIIQDLP EKPKGFDELI RLYFPRFCDI
201: KHLMKFCNGL SGGLNKLAEL LGVERLGISH QAGSDSLLTS RIFMILQDSF FNGSVEKFKR TFASLRKVTM SGEEAAPAVV TPAAEPAAIP EDMDLLTALE
301: LTLRKARAHG GVTRGLHESA KLIEKRVAQL CVLAEDCNQP DYVKLVKALC ADHNINLLTV PSAKTLGEWA SLCKIDSEGN ARKVVGCSCL VVKDYGEETT
401: ALNIVKKHIE SN
101: FNFCDFDPVC SISNPESIKL LRDSGIDFKK NYEKGVHSKR FAELLLTSGV VLNENVHWVT FHGVYDLAYL LKVLIIQDLP EKPKGFDELI RLYFPRFCDI
201: KHLMKFCNGL SGGLNKLAEL LGVERLGISH QAGSDSLLTS RIFMILQDSF FNGSVEKFKR TFASLRKVTM SGEEAAPAVV TPAAEPAAIP EDMDLLTALE
301: LTLRKARAHG GVTRGLHESA KLIEKRVAQL CVLAEDCNQP DYVKLVKALC ADHNINLLTV PSAKTLGEWA SLCKIDSEGN ARKVVGCSCL VVKDYGEETT
401: ALNIVKKHIE SN
001: MSLFLKDDSI QIREVWNDNL QEEMDLIRDV VDDFPYVAMD TEFPGIVVRP VGTFKSNADY HYETLKTNVN ILKMIQLGLT FSNEQGNLPT CGTDKYCIWQ
101: FNFREFDLDS DIFALDSIEL LKQSGIDLAK NTLDGIDSKR FAELLMSSGI VLNENVHWVT FHSGYDFGYL LKLLTCQNLP DSQTDFFKLI NVYFPTVYDI
201: KHLMKFCNSL HGGLNKLAEL LEVERVGICH QAGSDSLLTS CTFRKLKENF FVGPLHKYSG VLYGLGVENG QVAI
101: FNFREFDLDS DIFALDSIEL LKQSGIDLAK NTLDGIDSKR FAELLMSSGI VLNENVHWVT FHSGYDFGYL LKLLTCQNLP DSQTDFFKLI NVYFPTVYDI
201: KHLMKFCNSL HGGLNKLAEL LEVERVGICH QAGSDSLLTS CTFRKLKENF FVGPLHKYSG VLYGLGVENG QVAI
Arabidopsis Description
Polynucleotidyl transferase, ribonuclease H-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4HU15]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.