Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr4P04150_001 | Banana | cytosol | 98.14 | 98.14 |
| GSMUA_Achr4P11450_001 | Banana | cytosol | 87.73 | 87.73 |
| GSMUA_Achr9P22440_001 | Banana | cytosol | 78.81 | 84.13 |
| GSMUA_Achr2P05120_001 | Banana | cytosol | 63.94 | 66.93 |
| GSMUA_Achr9P13270_001 | Banana | cytosol | 66.54 | 65.09 |
| PGSC0003DMT400036620 | Potato | nucleus | 66.17 | 64.96 |
| GSMUA_Achr3P04600_001 | Banana | nucleus | 59.11 | 64.9 |
| Solyc03g117030.1.1 | Tomato | nucleus | 65.8 | 64.6 |
| KRH61689 | Soybean | nucleus | 65.06 | 64.1 |
| PGSC0003DMT400073328 | Potato | nucleus | 63.94 | 63.0 |
| KRH52356 | Soybean | nucleus | 63.94 | 63.0 |
| CDY64914 | Canola | nucleus | 63.94 | 62.32 |
| Bra005614.1-P | Field mustard | nucleus | 63.94 | 62.32 |
| CDY12234 | Canola | nucleus | 63.57 | 61.96 |
| AT2G32070.1 | Thale cress | nucleus | 63.2 | 61.82 |
| VIT_09s0070g00060.t01 | Wine grape | nucleus | 62.83 | 61.68 |
| VIT_04s0008g05850.t01 | Wine grape | nucleus | 62.08 | 61.17 |
| Solyc06g068410.2.1 | Tomato | nucleus | 57.25 | 61.11 |
| VIT_11s0037g00100.t01 | Wine grape | nucleus | 61.34 | 61.11 |
| KRH47360 | Soybean | nucleus | 62.83 | 61.01 |
| PGSC0003DMT400058833 | Potato | cytosol | 62.08 | 60.95 |
| Solyc11g045130.1.1 | Tomato | cytosol | 62.08 | 60.95 |
| Bra008439.1-P | Field mustard | nucleus | 61.34 | 60.22 |
| CDY53227 | Canola | nucleus | 61.34 | 60.22 |
| CDY63973 | Canola | nucleus | 61.34 | 60.22 |
| CDX87343 | Canola | cytosol | 61.34 | 60.0 |
| Bra035152.1-P | Field mustard | cytosol | 61.34 | 60.0 |
| CDY39943 | Canola | cytosol | 61.34 | 60.0 |
| KRH44539 | Soybean | cytosol | 61.34 | 58.72 |
| GSMUA_Achr1P10040_001 | Banana | nucleus | 59.11 | 56.99 |
| CDX70376 | Canola | nucleus | 58.36 | 56.88 |
| AT1G80780.3 | Thale cress | cytosol | 59.85 | 56.29 |
| Bra006083.1-P | Field mustard | nucleus | 57.99 | 56.12 |
| CDX78405 | Canola | nucleus | 57.99 | 56.12 |
| CDX97069 | Canola | nucleus | 57.62 | 55.36 |
| AT5G10960.1 | Thale cress | nucleus | 56.51 | 54.87 |
| CDX69796 | Canola | nucleus | 56.51 | 54.68 |
| GSMUA_Achr6P19450_001 | Banana | cytosol | 49.44 | 54.51 |
| Bra009001.1-P | Field mustard | nucleus | 56.51 | 54.29 |
| GSMUA_Achr9P29700_001 | Banana | cytosol | 42.75 | 53.99 |
| AT1G15920.2 | Thale cress | nucleus | 55.39 | 52.1 |
| KRH28796 | Soybean | nucleus | 18.96 | 52.04 |
| GSMUA_Achr6P19460_001 | Banana | cytosol | 33.09 | 51.45 |
| CDY35049 | Canola | nucleus | 52.42 | 51.09 |
| Bra026093.1-P | Field mustard | nucleus | 52.42 | 47.16 |
| GSMUA_Achr8P18010_001 | Banana | mitochondrion | 38.29 | 39.77 |
| GSMUA_AchrUn_... | Banana | mitochondrion | 37.92 | 39.69 |
| CDY12236 | Canola | cytosol, extracellular | 53.16 | 34.71 |
| CDY33367 | Canola | cytosol, extracellular | 52.42 | 31.06 |
| GSMUA_Achr4P30930_001 | Banana | cytosol | 21.19 | 29.23 |
| GSMUA_Achr4P30910_001 | Banana | nucleus | 30.11 | 23.96 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr4P04220_001 | EnsemblPlants:GSMUA_Achr4T04220_001 | EnsemblPlantsGene:GSMUA_Achr4G04220_001 | Gene3D:3.30.420.10 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | InterPro:IPR036397 | InterPro:RNaseH-like_sf | InterPro:RNaseH_sf | InterPro:RNase_CAF1 | PANTHER:PTHR10797 |
| PANTHER:PTHR10797:SF0 | PFAM:PF04857 | SUPFAM:SSF53098 | UniParc:UPI0002949FBE | UniProt:M0SKY9 | MapMan:35.1 |
Description
Probable CCR4-associated factor 1 homolog 7 [Source:GMGC_GENE;Acc:GSMUA_Achr4G04220_001]
Coordinates
chr4:-:3338366..3339175
Molecular Weight (calculated)
30567.2 Da
IEP (calculated)
4.775
GRAVY (calculated)
-0.183
Length
269 amino acids
Sequence
(BLAST)
(BLAST)
001: MSKSDDDAGV EIRDVWADNL EAEFAVIREV VDDFPFVAMD TEFPGVAIRP LGDFKTVADS NYHILRANVD LLHLIQLGLT FSDAEGNLPA TATGGRPIVW
101: QFNFREFDVD RDISNPDSID LLRKSDIDFK RNREHGVDAN RFAELFMASG VVLNDSVRWV TFHCAYDFGY LLKILTCRRL PETREGFSEL IRTFFPVMYD
201: IKHLMRFSNS LHGGLNKVAE QLEVDRVGTC HQAGSDSLLT ARAFRKLMEK HFDGSIDRYA GVMYGLDIE
101: QFNFREFDVD RDISNPDSID LLRKSDIDFK RNREHGVDAN RFAELFMASG VVLNDSVRWV TFHCAYDFGY LLKILTCRRL PETREGFSEL IRTFFPVMYD
201: IKHLMRFSNS LHGGLNKVAE QLEVDRVGTC HQAGSDSLLT ARAFRKLMEK HFDGSIDRYA GVMYGLDIE
001: MSLFLKDDSI QIREVWNDNL ESEMALIREV VDDFPFVAMD TEFPGIVCRP VGTFKTNTEY HYETLKTNVN ILKMIQLGLT FSDEKGNLPT CGTDNKYCIW
101: QFNFREFDLE SDIYATDSIE LLRQSGIDFV KNNEFGIDSK RFAELLMSSG IVLNENVHWV TFHSGYDFGY LLKLLTCQNL PETQTGFFEM ISVYFPRVYD
201: IKHLMKFCNS LHGGLNKLAE LLDVERVGIC HQAGSDSLLT SCTFRKLQEN FFIGSMEKYS GVLYGLGVEN GQIVH
101: QFNFREFDLE SDIYATDSIE LLRQSGIDFV KNNEFGIDSK RFAELLMSSG IVLNENVHWV TFHSGYDFGY LLKLLTCQNL PETQTGFFEM ISVYFPRVYD
201: IKHLMKFCNS LHGGLNKLAE LLDVERVGIC HQAGSDSLLT SCTFRKLQEN FFIGSMEKYS GVLYGLGVEN GQIVH
Arabidopsis Description
CAF1-7Probable CCR4-associated factor 1 homolog 7 [Source:UniProtKB/Swiss-Prot;Acc:Q9SKZ2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.