Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr10P... |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G44260.1 | GSMUA_Achr10P... | AT1G22920.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr6P19450_001 | Banana | cytosol | 85.45 | 74.59 |
| CDX70991 | Canola | cytosol, nucleus, plastid | 32.86 | 55.12 |
| GSMUA_Achr6P19460_001 | Banana | cytosol | 43.66 | 53.76 |
| CDY09125 | Canola | nucleus | 61.97 | 48.89 |
| Bra020179.1-P | Field mustard | nucleus | 61.5 | 48.52 |
| CDY35673 | Canola | nucleus | 61.5 | 48.52 |
| VIT_06s0080g01090.t01 | Wine grape | nucleus | 62.44 | 47.84 |
| CDY47299 | Canola | nucleus | 61.03 | 47.79 |
| Bra035002.1-P | Field mustard | nucleus | 60.56 | 47.6 |
| AT5G22250.1 | Thale cress | cytosol | 61.5 | 47.12 |
| CDY08688 | Canola | cytosol | 61.5 | 46.95 |
| AT3G44260.1 | Thale cress | cytosol | 61.5 | 46.79 |
| KRH25294 | Soybean | nucleus | 60.56 | 46.4 |
| KRH30376 | Soybean | nucleus | 61.5 | 46.13 |
| CDX98586 | Canola | nucleus | 60.56 | 45.58 |
| CDX92371 | Canola | nucleus | 60.09 | 45.23 |
| Bra002400.1-P | Field mustard | nucleus | 59.15 | 44.84 |
| GSMUA_Achr9P13270_001 | Banana | cytosol | 57.75 | 44.73 |
| GSMUA_Achr3P04600_001 | Banana | nucleus | 51.17 | 44.49 |
| GSMUA_Achr9P22440_001 | Banana | cytosol | 52.58 | 44.44 |
| CDX88806 | Canola | cytosol | 59.15 | 44.21 |
| Bra006616.1-P | Field mustard | cytosol | 58.69 | 43.86 |
| GSMUA_Achr4P11450_001 | Banana | cytosol | 54.93 | 43.49 |
| GSMUA_Achr2P05120_001 | Banana | cytosol | 52.11 | 43.19 |
| GSMUA_Achr4P04220_001 | Banana | nucleus | 53.99 | 42.75 |
| GSMUA_Achr4P04150_001 | Banana | cytosol | 53.99 | 42.75 |
| PGSC0003DMT400042215 | Potato | plastid | 55.87 | 41.75 |
| Solyc01g007840.2.1 | Tomato | plastid | 55.87 | 41.75 |
| KRH26669 | Soybean | endoplasmic reticulum, golgi | 60.56 | 41.75 |
| KRH22647 | Soybean | endoplasmic reticulum, vacuole | 60.56 | 41.35 |
| Zm00001d026657_P001 | Maize | cytosol | 56.34 | 40.13 |
| Zm00001d001774_P001 | Maize | nucleus | 55.4 | 39.73 |
| GSMUA_Achr8P18010_001 | Banana | mitochondrion | 47.42 | 39.0 |
| GSMUA_AchrUn_... | Banana | mitochondrion | 46.48 | 38.52 |
| Os04t0684900-02 | Rice | nucleus | 57.75 | 37.39 |
| EES11684 | Sorghum | nucleus | 55.87 | 35.52 |
| TraesCS2D01G597200.1 | Wheat | nucleus | 54.46 | 35.47 |
| TraesCS2A01G583000.1 | Wheat | nucleus | 53.52 | 35.19 |
| HORVU2Hr1G123480.1 | Barley | nucleus | 53.05 | 34.77 |
| TraesCS2B01G603600.1 | Wheat | cytosol | 52.58 | 34.46 |
| GSMUA_Achr1P10040_001 | Banana | nucleus | 39.91 | 30.47 |
| GSMUA_Achr4P30930_001 | Banana | cytosol | 21.6 | 23.59 |
| GSMUA_Achr4P30910_001 | Banana | nucleus | 31.46 | 19.82 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr9P29700_001 | EnsemblPlants:GSMUA_Achr9T29700_001 | EnsemblPlantsGene:GSMUA_Achr9G29700_001 | Gene3D:3.30.420.10 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | InterPro:IPR036397 | InterPro:RNaseH-like_sf | InterPro:RNaseH_sf | InterPro:RNase_CAF1 | PANTHER:PTHR10797 |
| PANTHER:PTHR10797:SF3 | PFAM:PF04857 | SUPFAM:SSF53098 | UniParc:UPI000295591B | UniProt:M0U4M7 | MapMan:35.1 |
Description
Probable CCR4-associated factor 1 homolog 11 [Source:GMGC_GENE;Acc:GSMUA_Achr9G29700_001]
Coordinates
chr9:-:33284549..33285502
Molecular Weight (calculated)
23456.0 Da
IEP (calculated)
6.165
GRAVY (calculated)
-0.066
Length
213 amino acids
Sequence
(BLAST)
(BLAST)
001: MPSLEDAKEP IEVQVRSVWA DNLEAEFDLI REAVECHPFA AMDTEFPGVV HRSRKHPAIL CPAERYALLK ANVDALHLIQ VGLTLSDAAG NLPDLGAGGS
101: NRARGIDSRR FAELLMSSGL VCNDSAVSWV TFHSAYDFGV FDMKHMIKHC HSLYGGLDRV ASTLQVDRAV GRCHQAGSDS LLTWQAFRRM KELFFIGNDD
201: GKHAGVLYGL EVC
101: NRARGIDSRR FAELLMSSGL VCNDSAVSWV TFHSAYDFGV FDMKHMIKHC HSLYGGLDRV ASTLQVDRAV GRCHQAGSDS LLTWQAFRRM KELFFIGNDD
201: GKHAGVLYGL EVC
001: MSLFLKDDSI QIREVWNDNL QEEMDLIRDV VDDFPYVAMD TEFPGIVVRP VGTFKSNADY HYETLKTNVN ILKMIQLGLT FSNEQGNLPT CGTDKYCIWQ
101: FNFREFDLDS DIFALDSIEL LKQSGIDLAK NTLDGIDSKR FAELLMSSGI VLNENVHWVT FHSGYDFGYL LKLLTCQNLP DSQTDFFKLI NVYFPTVYDI
201: KHLMKFCNSL HGGLNKLAEL LEVERVGICH QAGSDSLLTS CTFRKLKENF FVGPLHKYSG VLYGLGVENG QVAI
101: FNFREFDLDS DIFALDSIEL LKQSGIDLAK NTLDGIDSKR FAELLMSSGI VLNENVHWVT FHSGYDFGYL LKLLTCQNLP DSQTDFFKLI NVYFPTVYDI
201: KHLMKFCNSL HGGLNKLAEL LEVERVGICH QAGSDSLLTS CTFRKLKENF FVGPLHKYSG VLYGLGVENG QVAI
Arabidopsis Description
Polynucleotidyl transferase, ribonuclease H-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4HU15]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.