Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 1
- mitochondrion 1
- cytosol 2
Predictors | GFP | MS/MS | Papers |
---|---|---|---|
PPI
Inferred distinct locusB in Crop
locusB | locations |
---|---|
GSMUA_Achr10P... |
Inferred from Arabidopsis experimental PPI
Ath locusA | locusB | Ath locusB | Paper |
---|---|---|---|
AT3G44260.1 | GSMUA_Achr10P... | AT1G22920.1 | 21798944 |
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
CDX70991 | Canola | cytosol, nucleus, plastid | 36.42 | 49.61 |
GSMUA_Achr6P19450_001 | Banana | cytosol | 62.43 | 44.26 |
GSMUA_Achr9P29700_001 | Banana | cytosol | 53.76 | 43.66 |
Bra020179.1-P | Field mustard | nucleus | 60.12 | 38.52 |
CDY09125 | Canola | nucleus | 60.12 | 38.52 |
CDY35673 | Canola | nucleus | 58.96 | 37.78 |
CDY47299 | Canola | nucleus | 58.38 | 37.13 |
AT5G22250.1 | Thale cress | cytosol | 58.96 | 36.69 |
Bra035002.1-P | Field mustard | nucleus | 57.23 | 36.53 |
VIT_06s0080g01090.t01 | Wine grape | nucleus | 57.8 | 35.97 |
KRH25294 | Soybean | nucleus | 57.8 | 35.97 |
CDY08688 | Canola | cytosol | 57.8 | 35.84 |
AT3G44260.1 | Thale cress | cytosol | 57.23 | 35.36 |
CDX98586 | Canola | nucleus | 57.8 | 35.34 |
Bra002400.1-P | Field mustard | nucleus | 57.23 | 35.23 |
CDX92371 | Canola | nucleus | 57.23 | 34.98 |
KRH30376 | Soybean | nucleus | 57.23 | 34.86 |
Bra006616.1-P | Field mustard | cytosol | 57.23 | 34.74 |
CDX88806 | Canola | cytosol | 57.23 | 34.74 |
GSMUA_Achr8P18010_001 | Banana | mitochondrion | 51.45 | 34.36 |
GSMUA_Achr2P05120_001 | Banana | cytosol | 49.71 | 33.46 |
GSMUA_AchrUn_... | Banana | mitochondrion | 49.71 | 33.46 |
GSMUA_Achr4P04220_001 | Banana | nucleus | 51.45 | 33.09 |
GSMUA_Achr4P04150_001 | Banana | cytosol | 50.87 | 32.71 |
KRH26669 | Soybean | endoplasmic reticulum, golgi | 57.8 | 32.36 |
GSMUA_Achr4P11450_001 | Banana | cytosol | 49.13 | 31.6 |
KRH22647 | Soybean | endoplasmic reticulum, vacuole | 56.65 | 31.41 |
PGSC0003DMT400042215 | Potato | plastid | 51.45 | 31.23 |
Solyc01g007840.2.1 | Tomato | plastid | 50.87 | 30.88 |
GSMUA_Achr9P13270_001 | Banana | cytosol | 48.55 | 30.55 |
GSMUA_Achr9P22440_001 | Banana | cytosol | 43.35 | 29.76 |
GSMUA_Achr3P04600_001 | Banana | nucleus | 41.62 | 29.39 |
Zm00001d001774_P001 | Maize | nucleus | 49.71 | 28.96 |
Zm00001d026657_P001 | Maize | cytosol | 49.13 | 28.43 |
Os04t0684900-02 | Rice | nucleus | 53.76 | 28.27 |
TraesCS2A01G583000.1 | Wheat | nucleus | 51.45 | 27.47 |
TraesCS2D01G597200.1 | Wheat | nucleus | 51.45 | 27.22 |
HORVU2Hr1G123480.1 | Barley | nucleus | 50.87 | 27.08 |
TraesCS2B01G603600.1 | Wheat | cytosol | 49.71 | 26.46 |
EES11684 | Sorghum | nucleus | 49.71 | 25.67 |
GSMUA_Achr1P10040_001 | Banana | nucleus | 38.73 | 24.01 |
GSMUA_Achr4P30930_001 | Banana | cytosol | 21.97 | 19.49 |
GSMUA_Achr4P30910_001 | Banana | nucleus | 35.84 | 18.34 |
Protein Annotations
EnsemblPlants:GSMUA_Achr6P19460_001 | EnsemblPlants:GSMUA_Achr6T19460_001 | EnsemblPlantsGene:GSMUA_Achr6G19460_001 | Gene3D:3.30.420.10 | GO:GO:0003674 | GO:GO:0003676 |
GO:GO:0005488 | InterPro:IPR036397 | InterPro:RNaseH-like_sf | InterPro:RNaseH_sf | PANTHER:PTHR10797 | PANTHER:PTHR10797:SF3 |
SUPFAM:SSF53098 | UniParc:UPI00029527F1 | UniProt:M0T8E4 | MapMan:35.1 | : | : |
Description
Probable CCR4-associated factor 1 homolog 11 [Source:GMGC_GENE;Acc:GSMUA_Achr6G19460_001]
Coordinates
chr6:+:13768892..13769605
Molecular Weight (calculated)
19404.3 Da
IEP (calculated)
6.139
GRAVY (calculated)
-0.044
Length
173 amino acids
Sequence
(BLAST)
(BLAST)
001: MDTEFPGVIH LPQKHHTQLT NAERYALLKA NVDDLHPIQL GLTLSDAAGN LPDLGTGGAV RYIWDAYDFG YLVKILTGRR LPNYLDEFTA LVRVFFGYNM
101: FDMKHMIKFC HGLYGGLDRV AGTLQVNRVV GLSHQAGSDS LLTMQAFNRM KEIFFLDDAD KDYAGIIFGL ESN
101: FDMKHMIKFC HGLYGGLDRV AGTLQVNRVV GLSHQAGSDS LLTMQAFNRM KEIFFLDDAD KDYAGIIFGL ESN
001: MIKSEADLSD VIVIRDVWAY NLESEFDLIR GIVEDYPFIS MDTEFPGVIY KADLDVLRRG NPNYLYNLLK SNVDALSLIQ VGLTLSDADG NLPDLGGQKN
101: RRYIWEFNFR DFDVERDPHA PDSIELLRRH GIDFERNRRE GVESERFAEL MMSSGLICNE SVSWVTFHSA YDFGYLVKIL TRRQLPVALR EFLGLLRAFF
201: GDRVYDVKHI MRFCEQRLYG GLDRVARSLE VNRAVGKCHQ AGSDSLLTWQ AFQRMRDLYF VEDGAEKHAG VLYGLEVF
101: RRYIWEFNFR DFDVERDPHA PDSIELLRRH GIDFERNRRE GVESERFAEL MMSSGLICNE SVSWVTFHSA YDFGYLVKIL TRRQLPVALR EFLGLLRAFF
201: GDRVYDVKHI MRFCEQRLYG GLDRVARSLE VNRAVGKCHQ AGSDSLLTWQ AFQRMRDLYF VEDGAEKHAG VLYGLEVF
Arabidopsis Description
CAF1-11Probable CCR4-associated factor 1 homolog 11 [Source:UniProtKB/Swiss-Prot;Acc:Q9FMS6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.