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Banana
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 4
  • plastid 1
  • mitochondrion 1
  • cytosol 2
PPI

Inferred distinct locusB in Crop

locusBlocations
GSMUA_Achr10P...

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G44260.1 GSMUA_Achr10P... AT1G22920.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX70991 Canola cytosol, nucleus, plastid 36.42 49.61
GSMUA_Achr6P19450_001 Banana cytosol 62.43 44.26
GSMUA_Achr9P29700_001 Banana cytosol 53.76 43.66
Bra020179.1-P Field mustard nucleus 60.12 38.52
CDY09125 Canola nucleus 60.12 38.52
CDY35673 Canola nucleus 58.96 37.78
CDY47299 Canola nucleus 58.38 37.13
AT5G22250.1 Thale cress cytosol 58.96 36.69
Bra035002.1-P Field mustard nucleus 57.23 36.53
VIT_06s0080g01090.t01 Wine grape nucleus 57.8 35.97
KRH25294 Soybean nucleus 57.8 35.97
CDY08688 Canola cytosol 57.8 35.84
AT3G44260.1 Thale cress cytosol 57.23 35.36
CDX98586 Canola nucleus 57.8 35.34
Bra002400.1-P Field mustard nucleus 57.23 35.23
CDX92371 Canola nucleus 57.23 34.98
KRH30376 Soybean nucleus 57.23 34.86
Bra006616.1-P Field mustard cytosol 57.23 34.74
CDX88806 Canola cytosol 57.23 34.74
GSMUA_Achr8P18010_001 Banana mitochondrion 51.45 34.36
GSMUA_Achr2P05120_001 Banana cytosol 49.71 33.46
GSMUA_AchrUn_... Banana mitochondrion 49.71 33.46
GSMUA_Achr4P04220_001 Banana nucleus 51.45 33.09
GSMUA_Achr4P04150_001 Banana cytosol 50.87 32.71
KRH26669 Soybean endoplasmic reticulum, golgi 57.8 32.36
GSMUA_Achr4P11450_001 Banana cytosol 49.13 31.6
KRH22647 Soybean endoplasmic reticulum, vacuole 56.65 31.41
PGSC0003DMT400042215 Potato plastid 51.45 31.23
Solyc01g007840.2.1 Tomato plastid 50.87 30.88
GSMUA_Achr9P13270_001 Banana cytosol 48.55 30.55
GSMUA_Achr9P22440_001 Banana cytosol 43.35 29.76
GSMUA_Achr3P04600_001 Banana nucleus 41.62 29.39
Zm00001d001774_P001 Maize nucleus 49.71 28.96
Zm00001d026657_P001 Maize cytosol 49.13 28.43
Os04t0684900-02 Rice nucleus 53.76 28.27
TraesCS2A01G583000.1 Wheat nucleus 51.45 27.47
TraesCS2D01G597200.1 Wheat nucleus 51.45 27.22
HORVU2Hr1G123480.1 Barley nucleus 50.87 27.08
TraesCS2B01G603600.1 Wheat cytosol 49.71 26.46
EES11684 Sorghum nucleus 49.71 25.67
GSMUA_Achr1P10040_001 Banana nucleus 38.73 24.01
GSMUA_Achr4P30930_001 Banana cytosol 21.97 19.49
GSMUA_Achr4P30910_001 Banana nucleus 35.84 18.34
Protein Annotations
EnsemblPlants:GSMUA_Achr6P19460_001EnsemblPlants:GSMUA_Achr6T19460_001EnsemblPlantsGene:GSMUA_Achr6G19460_001Gene3D:3.30.420.10GO:GO:0003674GO:GO:0003676
GO:GO:0005488InterPro:IPR036397InterPro:RNaseH-like_sfInterPro:RNaseH_sfPANTHER:PTHR10797PANTHER:PTHR10797:SF3
SUPFAM:SSF53098UniParc:UPI00029527F1UniProt:M0T8E4MapMan:35.1::
Description
Probable CCR4-associated factor 1 homolog 11 [Source:GMGC_GENE;Acc:GSMUA_Achr6G19460_001]
Coordinates
chr6:+:13768892..13769605
Molecular Weight (calculated)
19404.3 Da
IEP (calculated)
6.139
GRAVY (calculated)
-0.044
Length
173 amino acids
Sequence
(BLAST)
001: MDTEFPGVIH LPQKHHTQLT NAERYALLKA NVDDLHPIQL GLTLSDAAGN LPDLGTGGAV RYIWDAYDFG YLVKILTGRR LPNYLDEFTA LVRVFFGYNM
101: FDMKHMIKFC HGLYGGLDRV AGTLQVNRVV GLSHQAGSDS LLTMQAFNRM KEIFFLDDAD KDYAGIIFGL ESN
Best Arabidopsis Sequence Match ( AT5G22250.1 )
(BLAST)
001: MIKSEADLSD VIVIRDVWAY NLESEFDLIR GIVEDYPFIS MDTEFPGVIY KADLDVLRRG NPNYLYNLLK SNVDALSLIQ VGLTLSDADG NLPDLGGQKN
101: RRYIWEFNFR DFDVERDPHA PDSIELLRRH GIDFERNRRE GVESERFAEL MMSSGLICNE SVSWVTFHSA YDFGYLVKIL TRRQLPVALR EFLGLLRAFF
201: GDRVYDVKHI MRFCEQRLYG GLDRVARSLE VNRAVGKCHQ AGSDSLLTWQ AFQRMRDLYF VEDGAEKHAG VLYGLEVF
Arabidopsis Description
CAF1-11Probable CCR4-associated factor 1 homolog 11 [Source:UniProtKB/Swiss-Prot;Acc:Q9FMS6]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.