Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS2A01G504600.1 | |
| TraesCS2D01G505300.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G44260.1 | TraesCS2A01G504600.1 | AT1G22920.1 | 21798944 |
| AT3G44260.1 | TraesCS2D01G505300.1 | AT1G22920.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2A01G583000.1 | Wheat | nucleus | 93.54 | 93.83 |
| TraesCS2D01G597200.1 | Wheat | nucleus | 93.85 | 93.27 |
| HORVU2Hr1G123480.1 | Barley | nucleus | 83.38 | 83.38 |
| Zm00001d026657_P001 | Maize | cytosol | 54.77 | 59.53 |
| CDX70991 | Canola | cytosol, nucleus, plastid | 23.08 | 59.06 |
| Zm00001d001774_P001 | Maize | nucleus | 52.31 | 57.24 |
| Os04t0684900-02 | Rice | nucleus | 56.0 | 55.32 |
| GSMUA_Achr9P29700_001 | Banana | cytosol | 34.46 | 52.58 |
| EES11684 | Sorghum | nucleus | 53.23 | 51.64 |
| GSMUA_Achr6P19450_001 | Banana | cytosol | 38.46 | 51.23 |
| GSMUA_Achr6P19460_001 | Banana | cytosol | 26.46 | 49.71 |
| AT5G22250.1 | Thale cress | cytosol | 42.46 | 49.64 |
| VIT_06s0080g01090.t01 | Wine grape | nucleus | 42.15 | 49.28 |
| CDY09125 | Canola | nucleus | 40.92 | 49.26 |
| Bra020179.1-P | Field mustard | nucleus | 40.92 | 49.26 |
| CDY35673 | Canola | nucleus | 40.62 | 48.89 |
| KRH25294 | Soybean | nucleus | 41.54 | 48.56 |
| Bra002400.1-P | Field mustard | nucleus | 41.54 | 48.04 |
| CDX92371 | Canola | nucleus | 41.54 | 47.7 |
| CDX98586 | Canola | nucleus | 41.23 | 47.35 |
| CDY47299 | Canola | nucleus | 39.38 | 47.06 |
| Bra035002.1-P | Field mustard | nucleus | 39.08 | 46.86 |
| KRH30376 | Soybean | nucleus | 40.62 | 46.48 |
| CDX88806 | Canola | cytosol | 40.31 | 45.96 |
| AT3G44260.1 | Thale cress | cytosol | 39.38 | 45.71 |
| PGSC0003DMT400042215 | Potato | plastid | 40.0 | 45.61 |
| Bra006616.1-P | Field mustard | cytosol | 40.0 | 45.61 |
| CDY08688 | Canola | cytosol | 39.08 | 45.52 |
| KRH26669 | Soybean | endoplasmic reticulum, golgi | 42.46 | 44.66 |
| Solyc01g007840.2.1 | Tomato | plastid | 38.77 | 44.21 |
| TraesCS5B01G224400.1 | Wheat | cytosol | 37.85 | 44.09 |
| TraesCS6B01G391400.1 | Wheat | cytosol | 38.15 | 42.91 |
| KRH22647 | Soybean | endoplasmic reticulum, vacuole | 40.62 | 42.31 |
| TraesCS7B01G198900.1 | Wheat | nucleus | 37.54 | 41.5 |
| TraesCS3B01G424000.1 | Wheat | cytosol | 19.69 | 31.07 |
| TraesCS4B01G071200.1 | Wheat | plastid | 27.38 | 29.57 |
| TraesCS7B01G235700.1 | Wheat | cytosol | 23.69 | 29.28 |
| TraesCS4B01G071000.1 | Wheat | plastid | 26.46 | 29.15 |
| TraesCS4B01G071100.1 | Wheat | plastid | 26.46 | 28.48 |
| TraesCS3B01G444600.1 | Wheat | mitochondrion | 26.15 | 28.43 |
| TraesCS3B01G445400.1 | Wheat | plastid | 26.46 | 25.98 |
| TraesCS4B01G078100.1 | Wheat | cytosol, plastid | 25.54 | 8.8 |
Protein Annotations
| EnsemblPlants:TraesCS2B01G603600.1 | EnsemblPlantsGene:TraesCS2B01G603600 | Gene3D:3.30.420.10 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR036397 | InterPro:RNaseH-like_sf | InterPro:RNaseH_sf | InterPro:RNase_CAF1 | PANTHER:PTHR10797 | PANTHER:PTHR10797:SF3 |
| PFAM:PF04857 | SEG:seg | SUPFAM:SSF53098 | TMHMM:TMhelix | MapMan:35.1 | : |
Description
No Description!
Coordinates
chr2B:+:785608805..785609782
Molecular Weight (calculated)
34825.4 Da
IEP (calculated)
8.883
GRAVY (calculated)
-0.114
Length
325 amino acids
Sequence
(BLAST)
(BLAST)
001: MKLQTEAAAA AGGEGRLMIR QVWANNVESE FQAIRQVAER FPYVSMDTEF PGVIHCPSKH HATLTPSERY AALMANVDAL HLIQVGLAFA ASPDAAPAVA
101: FEINLREFDP RVHRHNPSSV ALLAGHGLDF AKQRREGVDA RVFAALLMSS GLVCSGASAP TWVTFHSAYD FGYLVKLLMG RKLPRTLTEF LGLVRVFFGD
201: EVYDARHVMD SCAGLYGGLD ALAAQLGVKR AAGMSHQAGS DAALTWDVFR RIRDVYFAGN SRQGQGQGVG NFAGVLYGLD LELHLAAPAD NGNGNGNRNN
301: NKNKCGSGNG AGGRGNNRRA VAALR
101: FEINLREFDP RVHRHNPSSV ALLAGHGLDF AKQRREGVDA RVFAALLMSS GLVCSGASAP TWVTFHSAYD FGYLVKLLMG RKLPRTLTEF LGLVRVFFGD
201: EVYDARHVMD SCAGLYGGLD ALAAQLGVKR AAGMSHQAGS DAALTWDVFR RIRDVYFAGN SRQGQGQGVG NFAGVLYGLD LELHLAAPAD NGNGNGNRNN
301: NKNKCGSGNG AGGRGNNRRA VAALR
001: MSLFLKDDSI QIREVWNDNL QEEMDLIRDV VDDFPYVAMD TEFPGIVVRP VGTFKSNADY HYETLKTNVN ILKMIQLGLT FSNEQGNLPT CGTDKYCIWQ
101: FNFREFDLDS DIFALDSIEL LKQSGIDLAK NTLDGIDSKR FAELLMSSGI VLNENVHWVT FHSGYDFGYL LKLLTCQNLP DSQTDFFKLI NVYFPTVYDI
201: KHLMKFCNSL HGGLNKLAEL LEVERVGICH QAGSDSLLTS CTFRKLKENF FVGPLHKYSG VLYGLGVENE ANGKNVSYRM DMVAWA
101: FNFREFDLDS DIFALDSIEL LKQSGIDLAK NTLDGIDSKR FAELLMSSGI VLNENVHWVT FHSGYDFGYL LKLLTCQNLP DSQTDFFKLI NVYFPTVYDI
201: KHLMKFCNSL HGGLNKLAEL LEVERVGICH QAGSDSLLTS CTFRKLKENF FVGPLHKYSG VLYGLGVENE ANGKNVSYRM DMVAWA
Arabidopsis Description
Polynucleotidyl transferase, ribonuclease H-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4HU15]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.