Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 3
- nucleus 1
- mitochondrion 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS2A01G504600.1 | |
| TraesCS2D01G505300.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G44260.1 | TraesCS2A01G504600.1 | AT1G22920.1 | 21798944 |
| AT3G44260.1 | TraesCS2D01G505300.1 | AT1G22920.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4B01G071000.1 | Wheat | plastid | 91.72 | 93.9 |
| TraesCS4B01G071200.1 | Wheat | plastid | 92.38 | 92.69 |
| TraesCS4D01G069900.1 | Wheat | plastid | 88.08 | 88.08 |
| TraesCS4A01G243900.1 | Wheat | plastid | 87.42 | 87.71 |
| TraesCS4A01G243800.1 | Wheat | plastid | 86.09 | 87.25 |
| TraesCS4A01G243700.1 | Wheat | plastid | 84.77 | 85.91 |
| TraesCS3B01G424000.1 | Wheat | cytosol | 41.39 | 60.68 |
| TraesCS3B01G444600.1 | Wheat | mitochondrion | 58.94 | 59.53 |
| TraesCS3B01G445400.1 | Wheat | plastid | 60.26 | 54.98 |
| KXG20050 | Sorghum | plastid | 39.74 | 44.61 |
| KXG38897 | Sorghum | plastid | 48.01 | 42.52 |
| TraesCS7B01G235700.1 | Wheat | cytosol | 36.76 | 42.21 |
| OQU76452 | Sorghum | plastid | 21.85 | 40.49 |
| Zm00001d029981_P001 | Maize | plastid | 48.01 | 39.08 |
| OQU76454 | Sorghum | plastid | 22.19 | 33.0 |
| TraesCS5B01G224400.1 | Wheat | cytosol | 28.15 | 30.47 |
| Bra020179.1-P | Field mustard | nucleus | 26.82 | 30.0 |
| PGSC0003DMT400042215 | Potato | plastid | 28.15 | 29.82 |
| CDY09125 | Canola | nucleus | 26.49 | 29.63 |
| CDY35673 | Canola | nucleus | 26.49 | 29.63 |
| CDX70991 | Canola | cytosol, nucleus, plastid | 12.25 | 29.13 |
| KRH30376 | Soybean | nucleus | 27.15 | 28.87 |
| Bra035002.1-P | Field mustard | nucleus | 25.83 | 28.78 |
| KRH25294 | Soybean | nucleus | 26.49 | 28.78 |
| AT5G22250.1 | Thale cress | cytosol | 26.49 | 28.78 |
| VIT_06s0080g01090.t01 | Wine grape | nucleus | 26.49 | 28.78 |
| Solyc01g007840.2.1 | Tomato | plastid | 27.15 | 28.77 |
| CDY47299 | Canola | nucleus | 25.83 | 28.68 |
| Bra006616.1-P | Field mustard | cytosol | 26.82 | 28.42 |
| CDX88806 | Canola | cytosol | 26.82 | 28.42 |
| TraesCS6B01G391400.1 | Wheat | cytosol | 26.82 | 28.03 |
| CDX98586 | Canola | nucleus | 26.16 | 27.92 |
| AT3G44260.1 | Thale cress | cytosol | 25.83 | 27.86 |
| CDX92371 | Canola | nucleus | 25.83 | 27.56 |
| TraesCS7B01G198900.1 | Wheat | nucleus | 26.82 | 27.55 |
| GSMUA_Achr8P18010_001 | Banana | mitochondrion | 23.51 | 27.41 |
| Bra002400.1-P | Field mustard | nucleus | 25.5 | 27.4 |
| CDY08688 | Canola | cytosol | 25.17 | 27.24 |
| GSMUA_AchrUn_... | Banana | mitochondrion | 23.18 | 27.24 |
| TraesCS2B01G603600.1 | Wheat | cytosol | 28.48 | 26.46 |
| KRH22647 | Soybean | endoplasmic reticulum, vacuole | 26.82 | 25.96 |
| KRH26669 | Soybean | endoplasmic reticulum, golgi | 26.49 | 25.89 |
| OQU76453 | Sorghum | plastid | 24.83 | 24.92 |
| TraesCS4B01G078100.1 | Wheat | cytosol, plastid | 23.84 | 7.64 |
Protein Annotations
| EnsemblPlants:TraesCS4B01G071100.1 | EnsemblPlantsGene:TraesCS4B01G071100 | Gene3D:3.30.420.10 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR036397 | InterPro:RNaseH-like_sf | InterPro:RNaseH_sf | InterPro:RNase_CAF1 | PANTHER:PTHR10797 | PANTHER:PTHR10797:SF7 |
| PFAM:PF04857 | SEG:seg | SUPFAM:SSF53098 | MapMan:35.1 | : | : |
Description
No Description!
Coordinates
chr4B:-:65542102..65543010
Molecular Weight (calculated)
33121.9 Da
IEP (calculated)
9.532
GRAVY (calculated)
-0.175
Length
302 amino acids
Sequence
(BLAST)
(BLAST)
001: MNPAAGMFPM FPPPPPPPPF HYAFPMQPPP YFYHAPMSLV WPSSPVPVRS VWASNFKNES ANLRHVATNA QYVAIAVHYP GVVHHPSQDP KALTAEQRYA
101: LVKANVDDLK PLQLGIALYD SDGGYLAAWE FNLRDFRPQA DPHDENSLAY LAGRGLDVGA LRDHGVSADM LDKKLFESGL VGARRGRSRG WITYAGAYHV
201: AYLLKIVTGG APLPRDVAGF NGAVRRYLGD QVYDVAKMVV DCPAMPRGLE HIADYLGFHP PLGSPRLAAA AGVRALQVFM RLKYGELGGD VRKYRGLLKG
301: LH
101: LVKANVDDLK PLQLGIALYD SDGGYLAAWE FNLRDFRPQA DPHDENSLAY LAGRGLDVGA LRDHGVSADM LDKKLFESGL VGARRGRSRG WITYAGAYHV
201: AYLLKIVTGG APLPRDVAGF NGAVRRYLGD QVYDVAKMVV DCPAMPRGLE HIADYLGFHP PLGSPRLAAA AGVRALQVFM RLKYGELGGD VRKYRGLLKG
301: LH
001: MIKSEADLSD VIVIRDVWAY NLESEFDLIR GIVEDYPFIS MDTEFPGVIY KADLDVLRRG NPNYLYNLLK SNVDALSLIQ VGLTLSDADG NLPDLGGQKN
101: RRYIWEFNFR DFDVERDPHA PDSIELLRRH GIDFERNRRE GVESERFAEL MMSSGLICNE SVSWVTFHSA YDFGYLVKIL TRRQLPVALR EFLGLLRAFF
201: GDRVYDVKHI MRFCEQRLYG GLDRVARSLE VNRAVGKCHQ AGSDSLLTWQ AFQRMRDLYF VEDGAEKHAG VLYGLEVF
101: RRYIWEFNFR DFDVERDPHA PDSIELLRRH GIDFERNRRE GVESERFAEL MMSSGLICNE SVSWVTFHSA YDFGYLVKIL TRRQLPVALR EFLGLLRAFF
201: GDRVYDVKHI MRFCEQRLYG GLDRVARSLE VNRAVGKCHQ AGSDSLLTWQ AFQRMRDLYF VEDGAEKHAG VLYGLEVF
Arabidopsis Description
CAF1-11Probable CCR4-associated factor 1 homolog 11 [Source:UniProtKB/Swiss-Prot;Acc:Q9FMS6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.