Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX70991 | Canola | cytosol, nucleus, plastid | 40.29 | 88.19 |
| CDX98586 | Canola | nucleus | 86.33 | 84.81 |
| CDX92371 | Canola | nucleus | 85.61 | 84.1 |
| Bra002400.1-P | Field mustard | nucleus | 84.89 | 83.99 |
| CDX88806 | Canola | cytosol | 82.01 | 80.0 |
| Bra006616.1-P | Field mustard | cytosol | 81.3 | 79.3 |
| AT3G44260.1 | Thale cress | cytosol | 78.06 | 77.5 |
| VIT_06s0080g01090.t01 | Wine grape | nucleus | 71.94 | 71.94 |
| KRH30376 | Soybean | nucleus | 70.14 | 68.66 |
| KRH25294 | Soybean | nucleus | 67.99 | 67.99 |
| KRH26669 | Soybean | endoplasmic reticulum, golgi | 69.06 | 62.14 |
| GSMUA_Achr9P29700_001 | Banana | cytosol | 47.12 | 61.5 |
| GSMUA_Achr6P19450_001 | Banana | cytosol | 52.88 | 60.25 |
| KRH22647 | Soybean | endoplasmic reticulum, vacuole | 67.27 | 59.94 |
| GSMUA_Achr6P19460_001 | Banana | cytosol | 36.69 | 58.96 |
| Solyc01g007840.2.1 | Tomato | plastid | 59.35 | 57.89 |
| PGSC0003DMT400042215 | Potato | plastid | 59.35 | 57.89 |
| AT5G10960.1 | Thale cress | nucleus | 51.08 | 51.26 |
| AT2G32070.1 | Thale cress | nucleus | 50.0 | 50.55 |
| AT1G80780.3 | Thale cress | cytosol | 48.2 | 46.85 |
| Zm00001d026657_P001 | Maize | cytosol | 48.92 | 45.48 |
| Zm00001d001774_P001 | Maize | nucleus | 48.56 | 45.45 |
| AT1G15920.2 | Thale cress | nucleus | 46.4 | 45.1 |
| GSMUA_Achr8P18010_001 | Banana | mitochondrion | 40.29 | 43.24 |
| TraesCS2D01G597200.1 | Wheat | nucleus | 50.36 | 42.81 |
| Os04t0684900-02 | Rice | nucleus | 50.36 | 42.55 |
| TraesCS2B01G603600.1 | Wheat | cytosol | 49.64 | 42.46 |
| TraesCS2A01G583000.1 | Wheat | nucleus | 49.28 | 42.28 |
| HORVU2Hr1G123480.1 | Barley | nucleus | 48.92 | 41.85 |
| GSMUA_AchrUn_... | Banana | mitochondrion | 38.49 | 41.63 |
| EES11684 | Sorghum | nucleus | 48.2 | 40.0 |
| TraesCSU01G062600.1 | Wheat | cytosol | 35.97 | 38.91 |
| TraesCS7D01G075800.1 | Wheat | nucleus | 35.25 | 37.98 |
| Zm00001d007664_P001 | Maize | extracellular, nucleus, plastid | 16.55 | 35.38 |
| Zm00001d007669_P001 | Maize | extracellular, nucleus, plastid | 16.55 | 35.38 |
| Zm00001d007662_P001 | Maize | extracellular, nucleus, plastid | 16.55 | 35.38 |
| Zm00001d007666_P001 | Maize | extracellular, nucleus, plastid | 17.27 | 35.04 |
| AT3G44240.1 | Thale cress | cytosol | 29.5 | 34.31 |
| Os10t0123900-00 | Rice | extracellular, mitochondrion, nucleus | 33.81 | 34.18 |
| TraesCS3D01G384800.1 | Wheat | cytosol, mitochondrion, nucleus, plasma membrane | 21.22 | 33.91 |
| EER87806 | Sorghum | cytosol, nucleus, plasma membrane | 36.69 | 32.28 |
| Os10t0124200-00 | Rice | cytosol | 33.81 | 31.86 |
| TraesCS3B01G424000.1 | Wheat | cytosol | 23.02 | 31.07 |
| TraesCS7A01G347600.1 | Wheat | cytosol | 29.5 | 31.06 |
| TraesCS7A01G347500.1 | Wheat | cytosol | 29.5 | 30.94 |
| KXG20050 | Sorghum | plastid | 29.86 | 30.86 |
| TraesCS7B01G235700.1 | Wheat | cytosol | 29.14 | 30.8 |
| TraesCS7D01G331400.1 | Wheat | cytosol | 29.14 | 30.8 |
| EES10179 | Sorghum | plasma membrane, plastid | 30.22 | 29.89 |
| AT1G61470.1 | Thale cress | nucleus | 29.86 | 29.86 |
| Os06t0138400-00 | Rice | nucleus, peroxisome, plastid | 39.93 | 29.6 |
| Zm00001d048754_P001 | Maize | nucleus, plasma membrane, plastid | 31.3 | 29.59 |
| Zm00001d048752_P001 | Maize | nucleus, plasma membrane, plastid | 31.3 | 29.59 |
| Os10t0128300-00 | Rice | plastid | 30.94 | 29.55 |
| Zm00001d007654_P001 | Maize | nucleus, plasma membrane, plastid | 30.58 | 29.51 |
| Zm00001d048757_P001 | Maize | nucleus, plasma membrane, plastid | 30.94 | 29.45 |
| Zm00001d048746_P001 | Maize | nucleus, plasma membrane, plastid | 30.94 | 29.45 |
| TraesCS6D01G318000.1 | Wheat | plastid | 29.86 | 29.33 |
| TraesCS3D01G406100.1 | Wheat | nucleus, plasma membrane, plastid | 29.5 | 28.98 |
| Zm00001d048748_P001 | Maize | nucleus, plasma membrane, plastid | 30.22 | 28.67 |
| TraesCS3A01G411800.1 | Wheat | mitochondrion, plastid | 30.94 | 28.67 |
| Os06t0503900-01 | Rice | cytosol, nucleus, plasma membrane | 28.42 | 28.11 |
| EES09326 | Sorghum | mitochondrion, nucleus | 29.5 | 27.52 |
| TraesCS4D01G069900.1 | Wheat | plastid | 29.86 | 27.48 |
| Zm00001d002885_P001 | Maize | plastid | 31.3 | 27.27 |
| TraesCS4B01G071200.1 | Wheat | plastid | 29.5 | 27.24 |
| AT1G27890.1 | Thale cress | cytosol | 29.5 | 27.15 |
| TraesCS4B01G071000.1 | Wheat | plastid | 28.78 | 27.12 |
| TraesCS4A01G243900.1 | Wheat | plastid | 29.14 | 26.91 |
| AT1G27820.1 | Thale cress | cytosol | 29.86 | 26.77 |
| TraesCS3B01G444600.1 | Wheat | mitochondrion | 28.78 | 26.76 |
| TraesCS4A01G243700.1 | Wheat | plastid | 28.42 | 26.51 |
| TraesCS4B01G071100.1 | Wheat | plastid | 28.78 | 26.49 |
| TraesCS4A01G243800.1 | Wheat | plastid | 28.06 | 26.17 |
| AT1G06450.1 | Thale cress | cytosol | 33.09 | 25.56 |
| OQU83919 | Sorghum | mitochondrion | 22.3 | 25.41 |
| TraesCS3B01G445400.1 | Wheat | plastid | 29.5 | 24.77 |
| TraesCS7A01G082100.1 | Wheat | nucleus | 38.85 | 24.71 |
| OQU76452 | Sorghum | plastid | 14.39 | 24.54 |
| Os07t0169800-00 | Rice | nucleus | 42.81 | 23.8 |
| KXG22837 | Sorghum | mitochondrion | 29.14 | 23.41 |
| OQU76454 | Sorghum | plastid | 16.19 | 22.17 |
| KXG38897 | Sorghum | plastid | 26.98 | 21.99 |
| OQU83918 | Sorghum | cytosol, extracellular, nucleus | 14.75 | 21.81 |
| Zm00001d029981_P001 | Maize | plastid | 28.42 | 21.29 |
| Zm00001d031508_P001 | Maize | cytosol | 29.5 | 20.81 |
| Zm00001d007893_P001 | Maize | nucleus | 35.61 | 19.84 |
| EER98038 | Sorghum | plastid | 38.85 | 18.75 |
| OQU76453 | Sorghum | plastid | 16.55 | 15.28 |
Protein Annotations
| MapMan:16.8.2.1.2.2 | Gene3D:3.30.420.10 | EntrezGene:832285 | UniProt:A0A178UEK4 | ProteinID:AED93001.1 | ArrayExpress:AT5G22250 |
| EnsemblPlantsGene:AT5G22250 | RefSeq:AT5G22250 | TAIR:AT5G22250 | RefSeq:AT5G22250-TAIR-G | EnsemblPlants:AT5G22250.1 | TAIR:AT5G22250.1 |
| EMBL:AY063985 | Unigene:At.27479 | ProteinID:BAB08323.1 | EMBL:BT001962 | GO:GO:0000289 | GO:GO:0000932 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003824 | GO:GO:0004518 | GO:GO:0004527 |
| GO:GO:0004535 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0005737 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0006412 | GO:GO:0006950 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008408 | GO:GO:0009056 | GO:GO:0009058 | GO:GO:0009605 |
| GO:GO:0009607 | GO:GO:0009987 | GO:GO:0016787 | GO:GO:0017148 | GO:GO:0019538 | GO:GO:0030015 |
| GO:GO:0042742 | GO:GO:0043928 | GO:GO:0046872 | GO:GO:0090305 | GO:GO:0090503 | InterPro:IPR036397 |
| RefSeq:NP_197617.1 | ProteinID:OAO92089.1 | PFAM:PF04857 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 |
| PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 |
| PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009009 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 |
| PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 |
| PANTHER:PTHR10797 | PANTHER:PTHR10797:SF3 | UniProt:Q9FMS6 | InterPro:RNaseH-like_sf | InterPro:RNaseH_sf | InterPro:RNase_CAF1 |
| SUPFAM:SSF53098 | UniParc:UPI000000BD6B | : | : | : | : |
Description
CAF1-11Probable CCR4-associated factor 1 homolog 11 [Source:UniProtKB/Swiss-Prot;Acc:Q9FMS6]
Coordinates
chr5:-:7365477..7366799
Molecular Weight (calculated)
32170.3 Da
IEP (calculated)
4.984
GRAVY (calculated)
-0.229
Length
278 amino acids
Sequence
(BLAST)
(BLAST)
001: MIKSEADLSD VIVIRDVWAY NLESEFDLIR GIVEDYPFIS MDTEFPGVIY KADLDVLRRG NPNYLYNLLK SNVDALSLIQ VGLTLSDADG NLPDLGGQKN
101: RRYIWEFNFR DFDVERDPHA PDSIELLRRH GIDFERNRRE GVESERFAEL MMSSGLICNE SVSWVTFHSA YDFGYLVKIL TRRQLPVALR EFLGLLRAFF
201: GDRVYDVKHI MRFCEQRLYG GLDRVARSLE VNRAVGKCHQ AGSDSLLTWQ AFQRMRDLYF VEDGAEKHAG VLYGLEVF
101: RRYIWEFNFR DFDVERDPHA PDSIELLRRH GIDFERNRRE GVESERFAEL MMSSGLICNE SVSWVTFHSA YDFGYLVKIL TRRQLPVALR EFLGLLRAFF
201: GDRVYDVKHI MRFCEQRLYG GLDRVARSLE VNRAVGKCHQ AGSDSLLTWQ AFQRMRDLYF VEDGAEKHAG VLYGLEVF
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.