Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- nucleus 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT1G61470.1 | Thale cress | nucleus | 51.46 | 44.24 |
| AT1G27890.1 | Thale cress | cytosol | 50.21 | 39.74 |
| AT1G27820.1 | Thale cress | cytosol | 48.95 | 37.74 |
| GSMUA_Achr4P30930_001 | Banana | cytosol | 27.62 | 33.85 |
| AT3G44260.1 | Thale cress | cytosol | 34.73 | 29.64 |
| AT5G10960.1 | Thale cress | nucleus | 34.31 | 29.6 |
| AT5G22250.1 | Thale cress | cytosol | 34.31 | 29.5 |
| AT1G06450.1 | Thale cress | cytosol | 43.93 | 29.17 |
| AT2G32070.1 | Thale cress | nucleus | 33.05 | 28.73 |
| AT1G15920.2 | Thale cress | nucleus | 34.31 | 28.67 |
| AT1G80780.3 | Thale cress | cytosol | 31.38 | 26.22 |
| GSMUA_Achr4P30910_001 | Banana | nucleus | 36.82 | 26.04 |
Protein Annotations
| Gene3D:3.30.420.10 | MapMan:35.1 | EntrezGene:823549 | ProteinID:AEE77880.1 | ArrayExpress:AT3G44240 | EnsemblPlantsGene:AT3G44240 |
| RefSeq:AT3G44240 | TAIR:AT3G44240 | RefSeq:AT3G44240-TAIR-G | EnsemblPlants:AT3G44240.1 | TAIR:AT3G44240.1 | Unigene:At.53726 |
| ProteinID:CAB88992.1 | GO:GO:0000932 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003824 |
| GO:GO:0004518 | GO:GO:0004527 | GO:GO:0004535 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0016787 | GO:GO:0017148 | GO:GO:0019538 | GO:GO:0030015 | GO:GO:0043928 | GO:GO:0046872 |
| GO:GO:0090305 | GO:GO:0090503 | InterPro:IPR036397 | RefSeq:NP_190010.1 | PFAM:PF04857 | PO:PO:0000013 |
| PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0001185 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 |
| PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 |
| PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0025022 |
| PANTHER:PTHR10797 | PANTHER:PTHR10797:SF16 | UniProt:Q9LXM4 | InterPro:RNaseH-like_sf | InterPro:RNaseH_sf | InterPro:RNase_CAF1 |
| SUPFAM:SSF53098 | UniParc:UPI00000A1507 | : | : | : | : |
Description
CAF1-8Putative CCR4-associated factor 1 homolog 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9LXM4]
Coordinates
chr3:+:15940184..15940903
Molecular Weight (calculated)
27214.7 Da
IEP (calculated)
6.371
GRAVY (calculated)
-0.120
Length
239 amino acids
Sequence
(BLAST)
(BLAST)
001: MSLIEDCLRS YRFIAIDTEF PSTLRETTQH ATDEERYMDM SFSVDRAKLI QLGLTLFDIN GRIGGTWEIN FSDFGVDDAR NEKSIEFLRR NGLDLRKIRE
101: EGIRIEGFFS EMFWMLKKTR RNITWVTFHG SYDIAYLLKG FTGEALPVTS ERFSKAVARV LGSVYDLKVM AGRCEGLSSR LGLETLAHEF GLNRVGTAHH
201: AGSNNELTAM VFAKVLSPFP LFLRFGSLEL RTIESEAIV
101: EGIRIEGFFS EMFWMLKKTR RNITWVTFHG SYDIAYLLKG FTGEALPVTS ERFSKAVARV LGSVYDLKVM AGRCEGLSSR LGLETLAHEF GLNRVGTAHH
201: AGSNNELTAM VFAKVLSPFP LFLRFGSLEL RTIESEAIV
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.