Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT1G27890.1 | Thale cress | cytosol | 82.37 | 75.83 |
| AT1G27820.1 | Thale cress | cytosol | 82.73 | 74.19 |
| AT3G44240.1 | Thale cress | cytosol | 44.24 | 51.46 |
| CDX73277 | Canola | cytosol | 52.52 | 45.2 |
| CDY26919 | Canola | cytosol | 52.16 | 45.03 |
| AT1G06450.1 | Thale cress | cytosol | 41.37 | 31.94 |
| GSMUA_Achr4P30930_001 | Banana | cytosol | 22.3 | 31.79 |
| CDY22569 | Canola | cytosol | 51.44 | 31.64 |
| AT5G10960.1 | Thale cress | nucleus | 30.94 | 31.05 |
| AT2G32070.1 | Thale cress | nucleus | 30.22 | 30.55 |
| CDY12276 | Canola | cytosol | 38.49 | 30.23 |
| AT3G44260.1 | Thale cress | cytosol | 30.22 | 30.0 |
| AT5G22250.1 | Thale cress | cytosol | 29.86 | 29.86 |
| AT1G80780.3 | Thale cress | cytosol | 29.86 | 29.02 |
| AT1G15920.2 | Thale cress | nucleus | 29.86 | 29.02 |
| GSMUA_Achr4P30910_001 | Banana | nucleus | 32.01 | 26.33 |
| Bra023214.1-P | Field mustard | cytosol | 38.49 | 19.38 |
Protein Annotations
| Gene3D:3.30.420.10 | MapMan:35.1 | EntrezGene:842441 | ProteinID:AAC13894.1 | ProteinID:AEE33841.1 | ArrayExpress:AT1G61470 |
| EnsemblPlantsGene:AT1G61470 | RefSeq:AT1G61470 | TAIR:AT1G61470 | RefSeq:AT1G61470-TAIR-G | EnsemblPlants:AT1G61470.1 | TAIR:AT1G61470.1 |
| GO:GO:0000932 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003824 | GO:GO:0004518 |
| GO:GO:0004527 | GO:GO:0004535 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0005737 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0006412 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016787 |
| GO:GO:0017148 | GO:GO:0019538 | GO:GO:0030015 | GO:GO:0043928 | GO:GO:0046872 | GO:GO:0090305 |
| GO:GO:0090503 | InterPro:IPR036397 | RefSeq:NP_176342.1 | UniProt:O64773 | PFAM:PF04857 | PO:PO:0000293 |
| PANTHER:PTHR10797 | PANTHER:PTHR10797:SF16 | InterPro:RNaseH-like_sf | InterPro:RNaseH_sf | InterPro:RNase_CAF1 | SUPFAM:SSF53098 |
| UniParc:UPI00000AAA15 | SEG:seg | : | : | : | : |
Description
CAF1-5Probable CCR4-associated factor 1 homolog 5 [Source:UniProtKB/Swiss-Prot;Acc:O64773]
Coordinates
chr1:+:22678092..22679302
Molecular Weight (calculated)
32163.6 Da
IEP (calculated)
8.461
GRAVY (calculated)
-0.571
Length
278 amino acids
Sequence
(BLAST)
(BLAST)
001: MSGEVWRWNK QAEMNSIRDC LKHCNSIAID TEFPGCLKET PMDASDEIRY RDMKFNVDNT HLIQLGLTLF GKGITKTWEI NLSDFNESKS LKNDKSIAFL
101: KNNGLDLDKI REEGIGIEEF FMEFSQILNE KHGKMRWVTF QGSYDKAYLL KGLTRKPLPE TSKEFDETVQ QLLGRFVYDV KKMAGLCSGL SSRFGLQRIA
201: DVLQMRRVGK AHHAGSDSEL TARVFTKLIF DLVNSRKEST GRRADDQQYQ LEQQQHQQQL MMTRCYIPIP VQGRNYVL
101: KNNGLDLDKI REEGIGIEEF FMEFSQILNE KHGKMRWVTF QGSYDKAYLL KGLTRKPLPE TSKEFDETVQ QLLGRFVYDV KKMAGLCSGL SSRFGLQRIA
201: DVLQMRRVGK AHHAGSDSEL TARVFTKLIF DLVNSRKEST GRRADDQQYQ LEQQQHQQQL MMTRCYIPIP VQGRNYVL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.