Factsheet for Bra023214.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY12276	Canola	cytosol	47.1	73.45
CDY22569	Canola	cytosol	48.55	59.29
AT1G27890.1	Thale cress	cytosol	22.1	40.4
AT1G27820.1	Thale cress	cytosol	22.1	39.35
AT1G61470.1	Thale cress	nucleus	19.38	38.49
Bra006616.1-P	Field mustard	cytosol	13.41	25.96
Bra020179.1-P	Field mustard	nucleus	12.5	25.56
Bra035002.1-P	Field mustard	nucleus	12.5	25.46
Bra005614.1-P	Field mustard	nucleus	12.32	24.64
Bra002400.1-P	Field mustard	nucleus	12.32	24.2
Bra009001.1-P	Field mustard	nucleus	12.14	23.93
Bra008439.1-P	Field mustard	nucleus	11.78	23.72
Bra035152.1-P	Field mustard	cytosol	11.59	23.27
Bra032421.1-P	Field mustard	cytosol, mitochondrion, nucleus	15.22	22.89
Bra006083.1-P	Field mustard	nucleus	11.41	22.66
Bra026093.1-P	Field mustard	nucleus	11.59	21.4
GSMUA_Achr4P30910_001	Banana	nucleus	12.86	21.01
GSMUA_Achr4P30930_001	Banana	cytosol	7.07	20.0

Protein Annotations

EnsemblPlants:Bra023214.1	EnsemblPlants:Bra023214.1-P	EnsemblPlantsGene:Bra023214	Gene3D:3.30.420.10	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	InterPro:IPR036397	InterPro:RNaseH-like_sf	InterPro:RNaseH_sf	InterPro:RNase_CAF1	ncoils:Coil
PANTHER:PTHR10797	PANTHER:PTHR10797:SF16	PFAM:PF04857	SEG:seg	SUPFAM:SSF53098	UniParc:UPI000254236F
UniProt:M4E363	MapMan:35.1	:	:	:	:

Description

AT1G27820 (E=2e-024) | CCR4-NOT transcription complex protein, putative

Coordinates

chrA09:+:20626128..20635609

Molecular Weight (calculated)

64049.7 Da

IEP (calculated)

6.407

GRAVY (calculated)

-0.520

Length

552 amino acids

Sequence
(BLAST)

001: MREIFGSKNE EEMELIKKVL KTCEFIAVDT EFPGCLKETP IGATDETRYK NLKFNVERTK PIQLGFTLFE RDGSIGGTWE VNFKDFDART DACNEKSIEF
101: LKHPSHPILQ PGCISFLTVG ISTYSSARME EGKEGCGSVR LSSKTVRIAD DLHIKRVGDA HHAGSDSELT ARVFTDLIFS ISKEQKRELE EEKQNEERVR
201: RAMHIMHESE QKRKREEEEE TEERMKRAMH IMHEAEEAFV MERRGYVTVQ PRCGYLPVLH PPPRPVVFHP YPPQFAGYFC LAFIWSEIWL EMVMFLPFDY
301: WVGTVIEDGK DDLVAYRCQL SFILRVSLCQ LSFCTQQTVT SLVNKRETRC GSVRLSSKTV RIADDLHIKR VGDAHHAGSD SELTARVFTD LIFSISKEQK
401: RELEEEKQNE ERVRRAMHIM HESEQKRKRE EEEETEERMK RAMHIMHEAE EAFVMERRGY VTVQPRCGYL PVLHPPPRPV VFHPYPPQFA GYFVQPQRHI
501: HPLLPAQLHS KSLLVPAQLL YSADCYISDN LLDSIKWDDK ELAVTIAQTL TL

Best Arabidopsis Sequence Match ( AT1G27820.1 )
(BLAST)

001: MKQISSGEVW RWNKEVEMNS IRDCLKHCSS IAIDTEFPGC LKETPMDASE EIRYRDMKFN VDNTHLIQLG FTLFDRRGFA KTWEINLSDF DEHKCFKNDK
101: SIAFLKSNGL NLDKIREEGI GIDEFFRDFS QILTEKDGKI TWVNFQGSYD NAYLVKGLTG GKPLPETKEE FHETVQQLLG KFVFDVKKIA ESCSGLSSQF
201: GLQRIADVLQ MKRVGKAHHA GSDSELTARV FTKLTFDLLN SRKQSVRRVD HQQFQLEQQQ HQQFMMTRCY IPIPMPIPRP RPVMFAAHHQ NPYFGGGYFR
301: MPVQGMNYVL

Arabidopsis Description

CAF1-3Putative CCR4-associated factor 1 homolog 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SFX6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.