Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 3
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY64914 | Canola | nucleus | 100.0 | 100.0 |
| CDY12234 | Canola | nucleus | 98.19 | 98.19 |
| AT2G32070.1 | Thale cress | nucleus | 91.3 | 91.64 |
| Bra008439.1-P | Field mustard | nucleus | 82.25 | 82.85 |
| Bra035152.1-P | Field mustard | cytosol | 82.25 | 82.55 |
| VIT_09s0070g00060.t01 | Wine grape | nucleus | 79.35 | 79.93 |
| PGSC0003DMT400036620 | Potato | nucleus | 78.62 | 79.2 |
| KRH47360 | Soybean | nucleus | 78.99 | 78.7 |
| Solyc03g117030.1.1 | Tomato | nucleus | 77.9 | 78.47 |
| GSMUA_Achr3P04600_001 | Banana | nucleus | 69.57 | 78.37 |
| PGSC0003DMT400073328 | Potato | nucleus | 77.17 | 78.02 |
| KRH52356 | Soybean | nucleus | 76.09 | 76.92 |
| KRH44539 | Soybean | cytosol | 78.26 | 76.87 |
| KRH61689 | Soybean | nucleus | 75.72 | 76.56 |
| GSMUA_Achr9P13270_001 | Banana | cytosol | 76.09 | 76.36 |
| PGSC0003DMT400058833 | Potato | cytosol | 75.72 | 76.28 |
| VIT_11s0037g00100.t01 | Wine grape | nucleus | 73.19 | 74.81 |
| Solyc11g045130.1.1 | Tomato | cytosol | 73.91 | 74.45 |
| VIT_04s0008g05850.t01 | Wine grape | nucleus | 72.46 | 73.26 |
| Solyc06g068410.2.1 | Tomato | nucleus | 66.67 | 73.02 |
| TraesCS5D01G233200.1 | Wheat | cytosol | 69.57 | 68.82 |
| TraesCS5A01G225900.1 | Wheat | cytosol | 69.57 | 68.82 |
| TraesCS5B01G224400.1 | Wheat | cytosol | 69.57 | 68.82 |
| EES05957 | Sorghum | nucleus | 71.01 | 68.06 |
| EER96736 | Sorghum | nucleus | 68.12 | 67.38 |
| Os09t0416800-01 | Rice | cytosol | 68.12 | 67.14 |
| Bra006083.1-P | Field mustard | nucleus | 67.39 | 66.91 |
| Zm00001d020486_P001 | Maize | extracellular | 67.39 | 66.67 |
| TraesCS6A01G358700.1 | Wheat | cytosol | 69.57 | 66.44 |
| HORVU6Hr1G085410.1 | Barley | cytosol | 69.57 | 66.44 |
| TraesCS6B01G391400.1 | Wheat | cytosol | 69.57 | 66.44 |
| TraesCS6D01G341500.1 | Wheat | cytosol | 69.57 | 66.44 |
| Bra009001.1-P | Field mustard | nucleus | 67.39 | 66.43 |
| Zm00001d052031_P001 | Maize | cytosol | 68.84 | 66.2 |
| Os02t0796300-01 | Rice | cytosol | 70.29 | 65.76 |
| GSMUA_Achr4P04220_001 | Banana | nucleus | 62.32 | 63.94 |
| GSMUA_Achr4P04150_001 | Banana | cytosol | 62.32 | 63.94 |
| GSMUA_Achr4P11450_001 | Banana | cytosol | 61.59 | 63.2 |
| GSMUA_Achr9P22440_001 | Banana | cytosol | 57.25 | 62.7 |
| TraesCS7B01G198900.1 | Wheat | nucleus | 63.77 | 59.86 |
| TraesCS7D01G291400.1 | Wheat | nucleus | 63.41 | 59.52 |
| TraesCS7A01G297000.1 | Wheat | nucleus | 63.41 | 59.52 |
| HORVU7Hr1G067520.3 | Barley | nucleus | 63.77 | 58.67 |
| Os08t0440300-03 | Rice | cytosol | 60.14 | 57.64 |
| GSMUA_Achr2P05120_001 | Banana | cytosol | 53.26 | 57.2 |
| EES13910 | Sorghum | nucleus | 57.25 | 55.24 |
| KRH28796 | Soybean | nucleus | 19.57 | 55.1 |
| Bra026093.1-P | Field mustard | nucleus | 59.42 | 54.85 |
| Zm00001d018378_P001 | Maize | nucleus | 15.58 | 54.43 |
| Bra035002.1-P | Field mustard | nucleus | 52.54 | 53.51 |
| Zm00001d050433_P001 | Maize | nucleus | 53.99 | 53.21 |
| Bra020179.1-P | Field mustard | nucleus | 51.09 | 52.22 |
| Bra002400.1-P | Field mustard | nucleus | 50.72 | 49.82 |
| Bra006616.1-P | Field mustard | cytosol | 50.36 | 48.77 |
| GSMUA_Achr1P10040_001 | Banana | nucleus | 49.28 | 48.75 |
| Zm00001d032158_P002 | Maize | plastid | 57.25 | 39.7 |
| Bra032421.1-P | Field mustard | cytosol, mitochondrion, nucleus | 33.33 | 25.07 |
| Bra023214.1-P | Field mustard | cytosol | 24.64 | 12.32 |
Protein Annotations
| EnsemblPlants:Bra005614.1 | EnsemblPlants:Bra005614.1-P | EnsemblPlantsGene:Bra005614 | Gene3D:3.30.420.10 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | InterPro:IPR036397 | InterPro:RNaseH-like_sf | InterPro:RNaseH_sf | InterPro:RNase_CAF1 | PANTHER:PTHR10797 |
| PANTHER:PTHR10797:SF34 | PFAM:PF04857 | SUPFAM:SSF53098 | UniParc:UPI00025477D3 | UniProt:M4CN26 | MapMan:35.1 |
Description
AT2G32070 (E=1e-148) | CCR4-NOT transcription complex protein, putative
Coordinates
chrA05:+:6534717..6535547
Molecular Weight (calculated)
31808.0 Da
IEP (calculated)
5.045
GRAVY (calculated)
-0.175
Length
276 amino acids
Sequence
(BLAST)
(BLAST)
001: MSLFLKDDSI QIREVWHDNL ESEMALIRDI VDDFPFVAMD TEFPGIVCRP VGTFKTNTEY HYETLRTNVN LLKMIQLGLT FSDERGNLPT CGPDDSKYCI
101: WQFNFREFDL SSDIFAHDSI ELLRQSGIDF DKNKRNGVDS RRFAELLMSS GIVLNENVHW VTFHSGYDFG YLLKLLTCRD LPETQVGFFE MIRVYFPRVY
201: DIKHLMKFCN SLHGGLNKLA ELLEVERVGI CHQAGSDSLL TSCTFRKLQE NFFIGSMEKY SGVLYGLGVE NGQSVH
101: WQFNFREFDL SSDIFAHDSI ELLRQSGIDF DKNKRNGVDS RRFAELLMSS GIVLNENVHW VTFHSGYDFG YLLKLLTCRD LPETQVGFFE MIRVYFPRVY
201: DIKHLMKFCN SLHGGLNKLA ELLEVERVGI CHQAGSDSLL TSCTFRKLQE NFFIGSMEKY SGVLYGLGVE NGQSVH
001: MSLFLKDDSI QIREVWNDNL ESEMALIREV VDDFPFVAMD TEFPGIVCRP VGTFKTNTEY HYETLKTNVN ILKMIQLGLT FSDEKGNLPT CGTDNKYCIW
101: QFNFREFDLE SDIYATDSIE LLRQSGIDFV KNNEFGIDSK RFAELLMSSG IVLNENVHWV TFHSGYDFGY LLKLLTCQNL PETQTGFFEM ISVYFPRVYD
201: IKHLMKFCNS LHGGLNKLAE LLDVERVGIC HQAGSDSLLT SCTFRKLQEN FFIGSMEKYS GVLYGLGVEN GQIVH
101: QFNFREFDLE SDIYATDSIE LLRQSGIDFV KNNEFGIDSK RFAELLMSSG IVLNENVHWV TFHSGYDFGY LLKLLTCQNL PETQTGFFEM ISVYFPRVYD
201: IKHLMKFCNS LHGGLNKLAE LLDVERVGIC HQAGSDSLLT SCTFRKLQEN FFIGSMEKYS GVLYGLGVEN GQIVH
Arabidopsis Description
CAF1-7Probable CCR4-associated factor 1 homolog 7 [Source:UniProtKB/Swiss-Prot;Acc:Q9SKZ2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.