Factsheet for Zm00001d052031_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES05957	Sorghum	nucleus	94.43	94.1
HORVU6Hr1G085410.1	Barley	cytosol	90.59	89.97
TraesCS6D01G341500.1	Wheat	cytosol	90.59	89.97
TraesCS6B01G391400.1	Wheat	cytosol	90.59	89.97
TraesCS6A01G358700.1	Wheat	cytosol	90.59	89.97
Os02t0796300-01	Rice	cytosol	91.99	89.49
GSMUA_Achr9P13270_001	Banana	cytosol	72.82	76.0
GSMUA_Achr3P04600_001	Banana	nucleus	63.41	74.29
KRH61689	Soybean	nucleus	68.99	72.53
KRH52356	Soybean	nucleus	68.29	71.79
KRH47360	Soybean	nucleus	68.64	71.12
VIT_09s0070g00060.t01	Wine grape	nucleus	67.6	70.8
KRH44539	Soybean	cytosol	68.64	70.11
PGSC0003DMT400058833	Potato	cytosol	66.9	70.07
PGSC0003DMT400036620	Potato	nucleus	66.55	69.71
Zm00001d020486_P001	Maize	extracellular	67.6	69.53
Solyc03g117030.1.1	Tomato	nucleus	66.2	69.34
CDY12234	Canola	nucleus	66.55	69.2
Solyc11g045130.1.1	Tomato	cytosol	65.85	68.98
CDY64914	Canola	nucleus	66.2	68.84
Bra005614.1-P	Field mustard	nucleus	66.2	68.84
VIT_04s0008g05850.t01	Wine grape	nucleus	65.16	68.5
PGSC0003DMT400073328	Potato	nucleus	64.46	67.77
AT2G32070.1	Thale cress	nucleus	64.81	67.64
VIT_11s0037g00100.t01	Wine grape	nucleus	63.07	67.04
CDX87343	Canola	cytosol	64.11	66.91
Bra035152.1-P	Field mustard	cytosol	64.11	66.91
CDY53227	Canola	nucleus	63.76	66.79
CDY63973	Canola	nucleus	63.76	66.79
Bra008439.1-P	Field mustard	nucleus	63.76	66.79
CDY39943	Canola	cytosol	63.76	66.55
AT1G80780.3	Thale cress	cytosol	65.51	65.73
Solyc06g068410.2.1	Tomato	nucleus	57.14	65.08
CDX78405	Canola	nucleus	61.32	63.31
Bra006083.1-P	Field mustard	nucleus	61.32	63.31
CDX97069	Canola	nucleus	61.67	63.21
CDX70376	Canola	nucleus	60.63	63.04
CDX69796	Canola	nucleus	60.28	62.23
Bra009001.1-P	Field mustard	nucleus	60.63	62.14
Zm00001d018378_P001	Maize	nucleus	17.07	62.03
AT5G10960.1	Thale cress	nucleus	59.58	61.73
KRH28796	Soybean	nucleus	20.21	59.18
AT1G15920.2	Thale cress	nucleus	57.49	57.69
Zm00001d050433_P001	Maize	nucleus	53.66	55.0
CDY35049	Canola	nucleus	50.52	52.54
Bra026093.1-P	Field mustard	nucleus	50.87	48.83
Zm00001d032158_P002	Maize	plastid	58.88	42.46
Zm00001d026657_P001	Maize	cytosol	43.55	41.81
Zm00001d001774_P001	Maize	nucleus	41.81	40.4
CDY12236	Canola	cytosol, extracellular	50.52	35.19
CDY33367	Canola	cytosol, extracellular	52.26	33.04
Zm00001d007669_P001	Maize	extracellular, nucleus, plastid	13.94	30.77
Zm00001d007664_P001	Maize	extracellular, nucleus, plastid	13.94	30.77
Zm00001d007662_P001	Maize	extracellular, nucleus, plastid	13.94	30.77
Zm00001d007666_P001	Maize	extracellular, nucleus, plastid	14.29	29.93
Zm00001d048752_P001	Maize	nucleus, plasma membrane, plastid	29.62	28.91
Zm00001d048754_P001	Maize	nucleus, plasma membrane, plastid	29.62	28.91
Zm00001d048746_P001	Maize	nucleus, plasma membrane, plastid	28.92	28.42
Zm00001d048757_P001	Maize	nucleus, plasma membrane, plastid	28.57	28.08
Zm00001d048748_P001	Maize	nucleus, plasma membrane, plastid	28.57	27.99
Zm00001d007654_P001	Maize	nucleus, plasma membrane, plastid	26.13	26.04
Zm00001d002885_P001	Maize	plastid	28.92	26.02
Zm00001d029981_P001	Maize	plastid	29.97	23.18
Zm00001d031508_P001	Maize	cytosol	28.92	21.07
Zm00001d007893_P001	Maize	nucleus	35.19	20.24

Protein Annotations

EntrezGene:100216888	Gene3D:3.30.420.10	MapMan:35.1	ProteinID:AQK55847.1	UniProt:B4FK83	EMBL:BT037521
GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	InterPro:IPR036397	PFAM:PF04857	PANTHER:PTHR10797
PANTHER:PTHR10797:SF33	InterPro:RNaseH-like_sf	InterPro:RNaseH_sf	InterPro:RNase_CAF1	SUPFAM:SSF53098	UniParc:UPI00017B70BC
EnsemblPlantsGene:Zm00001d052031	EnsemblPlants:Zm00001d052031_P001	EnsemblPlants:Zm00001d052031_T001	:	:	:

Description

Probable CCR4-associated factor 1 homolog 11

Coordinates

chr4:-:176948157..176949020

Molecular Weight (calculated)

32245.5 Da

IEP (calculated)

4.626

GRAVY (calculated)

-0.009

Length

287 amino acids

Sequence
(BLAST)

001: MAMPDLTATV IPKLGEADDE SVEIREVWAD NMEEEFALIR DIVDEYPFVA MDTEFPGIVC RPVGAFRSPA DYNYATLKAN VDMLHLIQLG LTFSGPRGEL
101: PVLGAGRRRC VWQFNFREFD DARDIFASDS IELLRRSGID LRLNAERGVD ARRFAELLMS SGVVLNDSVY WVTFHAGYDF GYLLKILTCN CLPDTQAGFF
201: KLMKIYFPTV YDIKHLMKFC NSLHGGLNKL AELLDVERVG ESHQAGSDSL VTSCAFWKLK DSFFTGSTEK YAGVLYGLNA EIDVSAH

Best Arabidopsis Sequence Match ( AT2G32070.1 )
(BLAST)

001: MSLFLKDDSI QIREVWNDNL ESEMALIREV VDDFPFVAMD TEFPGIVCRP VGTFKTNTEY HYETLKTNVN ILKMIQLGLT FSDEKGNLPT CGTDNKYCIW
101: QFNFREFDLE SDIYATDSIE LLRQSGIDFV KNNEFGIDSK RFAELLMSSG IVLNENVHWV TFHSGYDFGY LLKLLTCQNL PETQTGFFEM ISVYFPRVYD
201: IKHLMKFCNS LHGGLNKLAE LLDVERVGIC HQAGSDSLLT SCTFRKLQEN FFIGSMEKYS GVLYGLGVEN GQIVH

Arabidopsis Description

CAF1-7Probable CCR4-associated factor 1 homolog 7 [Source:UniProtKB/Swiss-Prot;Acc:Q9SKZ2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.