Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 4
- nucleus 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU6Hr1G085410.1 | Barley | cytosol | 100.0 | 100.0 |
| TraesCS6B01G391400.1 | Wheat | cytosol | 100.0 | 100.0 |
| TraesCS6A01G358700.1 | Wheat | cytosol | 100.0 | 100.0 |
| EES05957 | Sorghum | nucleus | 93.08 | 93.4 |
| Os02t0796300-01 | Rice | cytosol | 93.43 | 91.53 |
| Zm00001d052031_P001 | Maize | cytosol | 89.97 | 90.59 |
| GSMUA_Achr9P13270_001 | Banana | cytosol | 73.36 | 77.09 |
| GSMUA_Achr3P04600_001 | Banana | nucleus | 64.36 | 75.92 |
| KRH61689 | Soybean | nucleus | 68.51 | 72.53 |
| KRH52356 | Soybean | nucleus | 68.51 | 72.53 |
| VIT_09s0070g00060.t01 | Wine grape | nucleus | 68.17 | 71.9 |
| KRH47360 | Soybean | nucleus | 68.17 | 71.12 |
| TraesCS5D01G233200.1 | Wheat | cytosol | 68.17 | 70.61 |
| PGSC0003DMT400036620 | Potato | nucleus | 66.78 | 70.44 |
| AT2G32070.1 | Thale cress | nucleus | 66.78 | 70.18 |
| KRH44539 | Soybean | cytosol | 68.17 | 70.11 |
| Solyc03g117030.1.1 | Tomato | nucleus | 66.44 | 70.07 |
| PGSC0003DMT400058833 | Potato | cytosol | 66.44 | 70.07 |
| CDY12234 | Canola | nucleus | 66.44 | 69.57 |
| CDY64914 | Canola | nucleus | 66.44 | 69.57 |
| Bra005614.1-P | Field mustard | nucleus | 66.44 | 69.57 |
| Solyc11g045130.1.1 | Tomato | cytosol | 65.74 | 69.34 |
| VIT_04s0008g05850.t01 | Wine grape | nucleus | 65.05 | 68.86 |
| CDY53227 | Canola | nucleus | 65.05 | 68.61 |
| Bra008439.1-P | Field mustard | nucleus | 65.05 | 68.61 |
| CDX87343 | Canola | cytosol | 65.05 | 68.36 |
| Bra035152.1-P | Field mustard | cytosol | 65.05 | 68.36 |
| CDY63973 | Canola | nucleus | 64.71 | 68.25 |
| PGSC0003DMT400073328 | Potato | nucleus | 64.36 | 68.13 |
| CDY39943 | Canola | cytosol | 64.71 | 68.0 |
| VIT_11s0037g00100.t01 | Wine grape | nucleus | 63.32 | 67.78 |
| AT1G80780.3 | Thale cress | cytosol | 65.4 | 66.08 |
| Solyc06g068410.2.1 | Tomato | nucleus | 57.44 | 65.87 |
| TraesCS7D01G291400.1 | Wheat | nucleus | 64.71 | 63.61 |
| CDX78405 | Canola | nucleus | 60.55 | 62.95 |
| Bra006083.1-P | Field mustard | nucleus | 60.55 | 62.95 |
| CDX70376 | Canola | nucleus | 59.52 | 62.32 |
| AT5G10960.1 | Thale cress | nucleus | 59.52 | 62.09 |
| CDX97069 | Canola | nucleus | 59.86 | 61.79 |
| CDX69796 | Canola | nucleus | 58.48 | 60.79 |
| Bra009001.1-P | Field mustard | nucleus | 58.82 | 60.71 |
| AT1G15920.2 | Thale cress | nucleus | 57.09 | 57.69 |
| KRH28796 | Soybean | nucleus | 19.38 | 57.14 |
| CDY35049 | Canola | nucleus | 51.21 | 53.62 |
| Bra026093.1-P | Field mustard | nucleus | 51.56 | 49.83 |
| TraesCS2D01G597200.1 | Wheat | nucleus | 42.91 | 37.92 |
| TraesCS7D01G075800.1 | Wheat | nucleus | 32.87 | 36.82 |
| CDY12236 | Canola | cytosol, extracellular | 51.9 | 36.41 |
| CDY33367 | Canola | cytosol, extracellular | 53.29 | 33.92 |
| TraesCS7D01G331400.1 | Wheat | cytosol | 28.03 | 30.8 |
| TraesCS3D01G384800.1 | Wheat | cytosol, mitochondrion, nucleus, plasma membrane | 17.65 | 29.31 |
| TraesCS3D01G406100.1 | Wheat | nucleus, plasma membrane, plastid | 28.37 | 28.98 |
| TraesCS6D01G318000.1 | Wheat | plastid | 26.99 | 27.56 |
| TraesCS4D01G069900.1 | Wheat | plastid | 27.68 | 26.49 |
| TraesCS3D01G126800.1 | Wheat | plastid | 26.3 | 11.18 |
Protein Annotations
| EnsemblPlants:TraesCS6D01G341500.1 | EnsemblPlantsGene:TraesCS6D01G341500 | Gene3D:3.30.420.10 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR036397 | InterPro:RNaseH-like_sf | InterPro:RNaseH_sf | InterPro:RNase_CAF1 | PANTHER:PTHR10797 | PANTHER:PTHR10797:SF33 |
| PFAM:PF04857 | SUPFAM:SSF53098 | MapMan:35.1 | : | : | : |
Description
No Description!
Coordinates
chr6D:-:440663463..440664332
Molecular Weight (calculated)
32096.2 Da
IEP (calculated)
4.751
GRAVY (calculated)
-0.004
Length
289 amino acids
Sequence
(BLAST)
(BLAST)
001: MAMSDLAAAV ISKANGGVDG EEPVEIREVW ADNLEAEFAL IRDVVDEFPF VAMDTEFPGI VCRPVGAFRS PADYNYATLK ANVDMLHLIQ LGLTFSGPTG
101: ELPALGAGRR RCVWQFNFRE FDDERDIFAT DSIELLRHSG IDFRRNAERG VDARRFAELL MSSGVVLNDA VYWVTFHAGY DFGYLLKILT CNSLPDTQAG
201: FFKLMKIYFP TVYDIKHLMK FCNSLHGGLN KLAELLDVER VGESHQAGSD SLVTSCAFWK LKDSFFAGST EKYAGVLYGL NAENGVSAH
101: ELPALGAGRR RCVWQFNFRE FDDERDIFAT DSIELLRHSG IDFRRNAERG VDARRFAELL MSSGVVLNDA VYWVTFHAGY DFGYLLKILT CNSLPDTQAG
201: FFKLMKIYFP TVYDIKHLMK FCNSLHGGLN KLAELLDVER VGESHQAGSD SLVTSCAFWK LKDSFFAGST EKYAGVLYGL NAENGVSAH
001: MSLFLKDDSI QIREVWNDNL ESEMALIREV VDDFPFVAMD TEFPGIVCRP VGTFKTNTEY HYETLKTNVN ILKMIQLGLT FSDEKGNLPT CGTDNKYCIW
101: QFNFREFDLE SDIYATDSIE LLRQSGIDFV KNNEFGIDSK RFAELLMSSG IVLNENVHWV TFHSGYDFGY LLKLLTCQNL PETQTGFFEM ISVYFPRVYD
201: IKHLMKFCNS LHGGLNKLAE LLDVERVGIC HQAGSDSLLT SCTFRKLQEN FFIGSMEKYS GVLYGLGVEN GQIVH
101: QFNFREFDLE SDIYATDSIE LLRQSGIDFV KNNEFGIDSK RFAELLMSSG IVLNENVHWV TFHSGYDFGY LLKLLTCQNL PETQTGFFEM ISVYFPRVYD
201: IKHLMKFCNS LHGGLNKLAE LLDVERVGIC HQAGSDSLLT SCTFRKLQEN FFIGSMEKYS GVLYGLGVEN GQIVH
Arabidopsis Description
CAF1-7Probable CCR4-associated factor 1 homolog 7 [Source:UniProtKB/Swiss-Prot;Acc:Q9SKZ2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.