Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 3
- nucleus 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7D01G291400.1 | Wheat | nucleus | 13.68 | 31.63 |
| TraesCS5D01G233200.1 | Wheat | cytosol | 12.65 | 30.82 |
| TraesCS6D01G341500.1 | Wheat | cytosol | 11.18 | 26.3 |
| TraesCS2D01G597200.1 | Wheat | nucleus | 12.35 | 25.69 |
| TraesCS7D01G075800.1 | Wheat | nucleus | 9.41 | 24.81 |
| TraesCS7D01G331400.1 | Wheat | cytosol | 8.97 | 23.19 |
| TraesCS3D01G384800.1 | Wheat | cytosol, mitochondrion, nucleus, plasma membrane | 5.44 | 21.26 |
| TraesCS3D01G406100.1 | Wheat | nucleus, plasma membrane, plastid | 8.09 | 19.43 |
| TraesCS6D01G318000.1 | Wheat | plastid | 7.79 | 18.73 |
| TraesCS3A01G447900.1 | Wheat | cytoskeleton, cytosol, nucleus | 17.35 | 18.55 |
| TraesCS4D01G069900.1 | Wheat | plastid | 8.24 | 18.54 |
| TraesCS4B01G078100.1 | Wheat | cytosol, plastid | 17.94 | 12.94 |
| CDX83963 | Canola | cytosol | 0.44 | 2.5 |
| CDX96828 | Canola | cytosol | 0.44 | 2.5 |
| CDY70980 | Canola | cytosol | 0.44 | 2.5 |
Protein Annotations
| EnsemblPlants:TraesCS3D01G126800.1 | EnsemblPlantsGene:TraesCS3D01G126800 | Gene3D:3.30.420.10 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR036397 | InterPro:RNaseH-like_sf | InterPro:RNaseH_sf | PANTHER:PTHR10797 | PANTHER:PTHR10797:SF32 | SEG:seg |
| SUPFAM:SSF53098 | MapMan:35.2 | : | : | : | : |
Description
No Description!
Coordinates
chr3D:+:84681603..84683775
Molecular Weight (calculated)
73248.1 Da
IEP (calculated)
6.634
GRAVY (calculated)
-0.074
Length
680 amino acids
Sequence
(BLAST)
(BLAST)
001: MDRPPVSRPS FPAGNRYAAV DGYGGGYGHR LASSRGQPGA PYGVAAPAQV RPLASPHGLG PPSRPLVAGD FSGKGDGLLG PGPGPVLYRP GNASSRPFLP
101: LNDYASDPSS GNSSSRPFLP LNNYASDPSS GNSSSGSFLH LNNYTGNSGT AASTPFPPVE HTGAFDGSGV VTIDLENSVQ VFNTIKRKVQ KRSGHLYIGL
201: DLEYCASSAT DLDHRPFCPN DWYEYLKKYV NEGALVQIGP ALAFEGPVPS PVEAYQVNVH IDVQSGGYHP SAVDFLESQG HKLAEYRDRG VMPEWLFADV
301: LSHLPFGDDS VTWITFHGDR DVGFLLRLLI AGGRGTLPSD KLTFLHVFRD KFPLFYDVKV LAQLVQPRFA GKLTKLTKLL GVQRQGEEHF AGSDALLTLG
401: YFNKIVEISA KTNIVSRMGL LSGLEELELS MTCGKSVNDS GINVLKVTAH NYDEEAARIS DLVGNNFQFV AMQVLLPASQ DILGTSAGAQ SSYERVKKVL
501: DSVDRFDLLI AFMNAEGVLG HGRVWQFSFN LRLDGADQDA YVCPRRLACV LASSGVTHRP NTVWVTVHGA YGIACLLKAF LSPVDLPHAY RDFIISRAAC
601: FPCLYDIGLL ANSARDLALL PTGCNGGLGH ISSALGVLED PCEVVTLLRT FNAFQARPDF QSFVPGGLME RCCPACLNMQ
101: LNDYASDPSS GNSSSRPFLP LNNYASDPSS GNSSSGSFLH LNNYTGNSGT AASTPFPPVE HTGAFDGSGV VTIDLENSVQ VFNTIKRKVQ KRSGHLYIGL
201: DLEYCASSAT DLDHRPFCPN DWYEYLKKYV NEGALVQIGP ALAFEGPVPS PVEAYQVNVH IDVQSGGYHP SAVDFLESQG HKLAEYRDRG VMPEWLFADV
301: LSHLPFGDDS VTWITFHGDR DVGFLLRLLI AGGRGTLPSD KLTFLHVFRD KFPLFYDVKV LAQLVQPRFA GKLTKLTKLL GVQRQGEEHF AGSDALLTLG
401: YFNKIVEISA KTNIVSRMGL LSGLEELELS MTCGKSVNDS GINVLKVTAH NYDEEAARIS DLVGNNFQFV AMQVLLPASQ DILGTSAGAQ SSYERVKKVL
501: DSVDRFDLLI AFMNAEGVLG HGRVWQFSFN LRLDGADQDA YVCPRRLACV LASSGVTHRP NTVWVTVHGA YGIACLLKAF LSPVDLPHAY RDFIISRAAC
601: FPCLYDIGLL ANSARDLALL PTGCNGGLGH ISSALGVLED PCEVVTLLRT FNAFQARPDF QSFVPGGLME RCCPACLNMQ
001: MAETLKEDSI MIREVWDYNL VEEFALIREI VDKFSYIAMD TEFPGVVLKP VATFKYNNDL NYRTLKENVD LLKLIQVGLT FSDENGNLPT CGTDKFCIWQ
101: FNFREFNIGE DIYASESIEL LRQCGIDFKK NIEKGIDVVR FGELMMSSGI VLNDAISWVT FHGGYDFGYL VKLLTCKELP LKQADFFKLL YVYFPTVYDI
201: KHLMTFCNGL FGGLNRLAEL MGVERVGICH QAGSDSLLTL GSFRKLKERY FPGSTEKYTG VLYGLGVEDG TTTTVAN
101: FNFREFNIGE DIYASESIEL LRQCGIDFKK NIEKGIDVVR FGELMMSSGI VLNDAISWVT FHGGYDFGYL VKLLTCKELP LKQADFFKLL YVYFPTVYDI
201: KHLMTFCNGL FGGLNRLAEL MGVERVGICH QAGSDSLLTL GSFRKLKERY FPGSTEKYTG VLYGLGVEDG TTTTVAN
Arabidopsis Description
CAF1-10Probable CCR4-associated factor 1 homolog 10 [Source:UniProtKB/Swiss-Prot;Acc:Q9LEU4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.