Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS2A01G504600.1 | |
| TraesCS2D01G505300.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G44260.1 | TraesCS2A01G504600.1 | AT1G22920.1 | 21798944 |
| AT3G44260.1 | TraesCS2D01G505300.1 | AT1G22920.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7B01G235700.1 | Wheat | cytosol | 92.4 | 92.4 |
| TraesCS7A01G347500.1 | Wheat | cytosol | 89.35 | 88.68 |
| TraesCS7A01G347600.1 | Wheat | cytosol | 86.69 | 86.36 |
| Os06t0503900-01 | Rice | cytosol, nucleus, plasma membrane | 47.91 | 44.84 |
| TraesCS3D01G384800.1 | Wheat | cytosol, mitochondrion, nucleus, plasma membrane | 26.62 | 40.23 |
| TraesCS6D01G318000.1 | Wheat | plastid | 42.59 | 39.58 |
| TraesCS4D01G069900.1 | Wheat | plastid | 42.97 | 37.42 |
| TraesCS3D01G406100.1 | Wheat | nucleus, plasma membrane, plastid | 38.78 | 36.04 |
| TraesCS5D01G233200.1 | Wheat | cytosol | 33.84 | 31.9 |
| Bra035002.1-P | Field mustard | nucleus | 31.94 | 31.0 |
| CDX70991 | Canola | cytosol, nucleus, plastid | 14.83 | 30.71 |
| Bra020179.1-P | Field mustard | nucleus | 31.18 | 30.37 |
| CDY35673 | Canola | nucleus | 31.18 | 30.37 |
| CDY47299 | Canola | nucleus | 31.18 | 30.15 |
| CDY08688 | Canola | cytosol | 31.94 | 30.11 |
| CDY09125 | Canola | nucleus | 30.8 | 30.0 |
| VIT_06s0080g01090.t01 | Wine grape | nucleus | 31.18 | 29.5 |
| AT3G44260.1 | Thale cress | cytosol | 31.18 | 29.29 |
| AT5G22250.1 | Thale cress | cytosol | 30.8 | 29.14 |
| PGSC0003DMT400042215 | Potato | plastid | 31.18 | 28.77 |
| CDX98586 | Canola | nucleus | 30.8 | 28.62 |
| KRH25294 | Soybean | nucleus | 30.04 | 28.42 |
| Bra006616.1-P | Field mustard | cytosol | 30.42 | 28.07 |
| CDX88806 | Canola | cytosol | 30.42 | 28.07 |
| TraesCS6D01G341500.1 | Wheat | cytosol | 30.8 | 28.03 |
| CDX92371 | Canola | nucleus | 30.04 | 27.92 |
| TraesCS7D01G291400.1 | Wheat | nucleus | 31.18 | 27.89 |
| Bra002400.1-P | Field mustard | nucleus | 29.66 | 27.76 |
| Solyc01g007840.2.1 | Tomato | plastid | 30.04 | 27.72 |
| TraesCS7D01G075800.1 | Wheat | nucleus | 27.0 | 27.52 |
| KRH30376 | Soybean | nucleus | 29.66 | 27.46 |
| KRH26669 | Soybean | endoplasmic reticulum, golgi | 30.42 | 25.89 |
| GSMUA_Achr8P18010_001 | Banana | mitochondrion | 24.71 | 25.1 |
| GSMUA_AchrUn_... | Banana | mitochondrion | 24.33 | 24.9 |
| KRH22647 | Soybean | endoplasmic reticulum, vacuole | 29.28 | 24.68 |
| TraesCS2D01G597200.1 | Wheat | nucleus | 29.66 | 23.85 |
| TraesCS3D01G126800.1 | Wheat | plastid | 23.19 | 8.97 |
Protein Annotations
| EnsemblPlants:TraesCS7D01G331400.1 | EnsemblPlantsGene:TraesCS7D01G331400 | Gene3D:3.30.420.10 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR036397 | InterPro:RNaseH-like_sf | InterPro:RNaseH_sf | InterPro:RNase_CAF1 | PANTHER:PTHR10797 | PANTHER:PTHR10797:SF7 |
| PFAM:PF04857 | SUPFAM:SSF53098 | MapMan:35.1 | : | : | : |
Description
No Description!
Coordinates
chr7D:+:422721599..422722638
Molecular Weight (calculated)
28878.5 Da
IEP (calculated)
6.717
GRAVY (calculated)
-0.202
Length
263 amino acids
Sequence
(BLAST)
(BLAST)
001: MDDGAAAVRS VWADNFKAES AVFCQIAPHA THVALNVQYP GCVIRGDGRK SHYDMTAEER YQVIHANVSL LKPLQVGLAI RTDDGGRFAW EFNLRGFDVA
101: SDLDARDPDS IAYLARRGVD FGRLPESGIH GYELRWMLRD SGLLRAQASW ATFAGAYHVG YFAAMMSGEK LPDDVDDFME MVRQLLGPAV YDVKRLARQH
201: DQRCVGALGH IVKQLGVVQP NEPKPTPAGT GSTLALLAFE TLKEKLGANA EKYRGQLCGL QAV
101: SDLDARDPDS IAYLARRGVD FGRLPESGIH GYELRWMLRD SGLLRAQASW ATFAGAYHVG YFAAMMSGEK LPDDVDDFME MVRQLLGPAV YDVKRLARQH
201: DQRCVGALGH IVKQLGVVQP NEPKPTPAGT GSTLALLAFE TLKEKLGANA EKYRGQLCGL QAV
001: MAIIKPNRDL KPDGVTVVTR EVWAENLESE FELISEIIDD YPFISMDTEF PGVIFKSDLR FTNPDDLYTL LKANVDALSL IQVGLTLSDV NGNLPDLGDD
101: LHRGFIWEFN FRDFDVARDA HAPDSIELLR RQGIDFERNC RDGVESERFA ELMMSSGLVC NEEVSWVTFH SAYDFGYLMK ILTRRELPGA LGEFKRVMRV
201: LFGERVYDVK HMMKFCERRL FGGLDRVART LEVNRAVGKC HQAGSDSLLT WHAFQRMRDL YFVQDGPEKH AGVLYGLEVF
101: LHRGFIWEFN FRDFDVARDA HAPDSIELLR RQGIDFERNC RDGVESERFA ELMMSSGLVC NEEVSWVTFH SAYDFGYLMK ILTRRELPGA LGEFKRVMRV
201: LFGERVYDVK HMMKFCERRL FGGLDRVART LEVNRAVGKC HQAGSDSLLT WHAFQRMRDL YFVQDGPEKH AGVLYGLEVF
Arabidopsis Description
CAF1-9Probable CCR4-associated factor 1 homolog 9 [Source:UniProtKB/Swiss-Prot;Acc:Q9LXM2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.