Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX92371 | Canola | nucleus | 96.82 | 96.82 |
| CDX70991 | Canola | cytosol, nucleus, plastid | 42.76 | 95.28 |
| CDX88806 | Canola | cytosol | 89.75 | 89.12 |
| CDY09125 | Canola | nucleus | 84.81 | 88.89 |
| CDY35673 | Canola | nucleus | 84.45 | 88.52 |
| AT5G22250.1 | Thale cress | cytosol | 84.81 | 86.33 |
| CDY47299 | Canola | nucleus | 78.8 | 81.99 |
| CDY08688 | Canola | cytosol | 78.45 | 79.57 |
| VIT_06s0080g01090.t01 | Wine grape | nucleus | 71.38 | 72.66 |
| KRH25294 | Soybean | nucleus | 65.72 | 66.91 |
| KRH30376 | Soybean | nucleus | 67.14 | 66.9 |
| KRH26669 | Soybean | endoplasmic reticulum, golgi | 67.49 | 61.81 |
| KRH22647 | Soybean | endoplasmic reticulum, vacuole | 66.78 | 60.58 |
| GSMUA_Achr9P29700_001 | Banana | cytosol | 45.58 | 60.56 |
| GSMUA_Achr6P19450_001 | Banana | cytosol | 51.24 | 59.43 |
| PGSC0003DMT400042215 | Potato | plastid | 58.66 | 58.25 |
| GSMUA_Achr6P19460_001 | Banana | cytosol | 35.34 | 57.8 |
| Solyc01g007840.2.1 | Tomato | plastid | 57.95 | 57.54 |
| CDY64914 | Canola | nucleus | 50.53 | 51.81 |
| CDX70376 | Canola | nucleus | 50.18 | 51.45 |
| CDY12234 | Canola | nucleus | 50.18 | 51.45 |
| CDX78405 | Canola | nucleus | 50.53 | 51.44 |
| CDY53227 | Canola | nucleus | 49.47 | 51.09 |
| CDY63973 | Canola | nucleus | 49.47 | 51.09 |
| CDX69796 | Canola | nucleus | 50.18 | 51.08 |
| CDX87343 | Canola | cytosol | 49.12 | 50.55 |
| CDY35049 | Canola | nucleus | 49.12 | 50.36 |
| CDX97069 | Canola | nucleus | 49.82 | 50.36 |
| CDY39943 | Canola | cytosol | 48.76 | 50.18 |
| Zm00001d001774_P001 | Maize | nucleus | 48.41 | 46.13 |
| Zm00001d026657_P001 | Maize | cytosol | 48.06 | 45.48 |
| Os04t0684900-02 | Rice | nucleus | 50.18 | 43.16 |
| GSMUA_Achr8P18010_001 | Banana | mitochondrion | 38.52 | 42.08 |
| GSMUA_AchrUn_... | Banana | mitochondrion | 37.81 | 41.63 |
| TraesCS2D01G597200.1 | Wheat | nucleus | 48.06 | 41.59 |
| TraesCS2B01G603600.1 | Wheat | cytosol | 47.35 | 41.23 |
| TraesCS2A01G583000.1 | Wheat | nucleus | 47.0 | 41.05 |
| HORVU2Hr1G123480.1 | Barley | nucleus | 47.0 | 40.92 |
| EES11684 | Sorghum | nucleus | 48.06 | 40.6 |
| TraesCSU01G062600.1 | Wheat | cytosol | 34.28 | 37.74 |
| TraesCS7D01G075800.1 | Wheat | nucleus | 34.28 | 37.6 |
| Zm00001d007662_P001 | Maize | extracellular, nucleus, plastid | 16.25 | 35.38 |
| Zm00001d007664_P001 | Maize | extracellular, nucleus, plastid | 16.25 | 35.38 |
| Zm00001d007669_P001 | Maize | extracellular, nucleus, plastid | 16.25 | 35.38 |
| Zm00001d007666_P001 | Maize | extracellular, nucleus, plastid | 16.96 | 35.04 |
| Os10t0123900-00 | Rice | extracellular, mitochondrion, nucleus | 33.92 | 34.91 |
| TraesCS3D01G384800.1 | Wheat | cytosol, mitochondrion, nucleus, plasma membrane | 21.2 | 34.48 |
| EER87806 | Sorghum | cytosol, nucleus, plasma membrane | 35.69 | 31.96 |
| Os10t0124200-00 | Rice | cytosol | 33.22 | 31.86 |
| EES10179 | Sorghum | plasma membrane, plastid | 31.45 | 31.67 |
| TraesCS3B01G424000.1 | Wheat | cytosol | 22.97 | 31.55 |
| TraesCS7A01G347500.1 | Wheat | cytosol | 29.33 | 31.32 |
| TraesCS7A01G347600.1 | Wheat | cytosol | 28.98 | 31.06 |
| Zm00001d007654_P001 | Maize | nucleus, plasma membrane, plastid | 31.45 | 30.9 |
| CDY33367 | Canola | cytosol, extracellular | 49.47 | 30.84 |
| TraesCS7B01G235700.1 | Wheat | cytosol | 28.62 | 30.8 |
| TraesCS7D01G331400.1 | Wheat | cytosol | 28.62 | 30.8 |
| Zm00001d048752_P001 | Maize | nucleus, plasma membrane, plastid | 31.8 | 30.61 |
| Zm00001d048754_P001 | Maize | nucleus, plasma membrane, plastid | 31.8 | 30.61 |
| KXG20050 | Sorghum | plastid | 28.98 | 30.48 |
| Zm00001d048757_P001 | Maize | nucleus, plasma membrane, plastid | 31.45 | 30.48 |
| Zm00001d048746_P001 | Maize | nucleus, plasma membrane, plastid | 31.1 | 30.14 |
| Zm00001d048748_P001 | Maize | nucleus, plasma membrane, plastid | 31.1 | 30.03 |
| Os10t0128300-00 | Rice | plastid | 30.74 | 29.9 |
| Os06t0503900-01 | Rice | cytosol, nucleus, plasma membrane | 29.33 | 29.54 |
| Os06t0138400-00 | Rice | nucleus, peroxisome, plastid | 38.52 | 29.07 |
| TraesCS3A01G411800.1 | Wheat | mitochondrion, plastid | 30.74 | 29.0 |
| TraesCS3D01G406100.1 | Wheat | nucleus, plasma membrane, plastid | 28.98 | 28.98 |
| CDY12236 | Canola | cytosol, extracellular | 41.7 | 28.64 |
| TraesCS6D01G318000.1 | Wheat | plastid | 28.62 | 28.62 |
| Zm00001d002885_P001 | Maize | plastid | 31.8 | 28.21 |
| OQU83919 | Sorghum | mitochondrion | 23.67 | 27.46 |
| TraesCS4A01G243700.1 | Wheat | plastid | 28.62 | 27.18 |
| TraesCS4D01G069900.1 | Wheat | plastid | 28.98 | 27.15 |
| CDX73277 | Canola | cytosol | 30.74 | 26.93 |
| TraesCS4A01G243900.1 | Wheat | plastid | 28.62 | 26.91 |
| TraesCS4B01G071200.1 | Wheat | plastid | 28.62 | 26.91 |
| TraesCS3B01G444600.1 | Wheat | mitochondrion | 28.27 | 26.76 |
| CDY26919 | Canola | cytosol | 30.39 | 26.71 |
| EES09326 | Sorghum | mitochondrion, nucleus | 27.92 | 26.51 |
| TraesCS4A01G243800.1 | Wheat | plastid | 27.92 | 26.51 |
| TraesCS4B01G071000.1 | Wheat | plastid | 27.56 | 26.44 |
| TraesCS4B01G071100.1 | Wheat | plastid | 27.92 | 26.16 |
| CDY06214 | Canola | cytosol, mitochondrion, nucleus | 33.92 | 26.16 |
| CDY09974 | Canola | cytosol, mitochondrion, nucleus | 33.57 | 25.89 |
| OQU76452 | Sorghum | plastid | 14.84 | 25.77 |
| CDY09972 | Canola | cytosol, mitochondrion, nucleus | 33.92 | 25.46 |
| TraesCS3B01G445400.1 | Wheat | plastid | 28.98 | 24.77 |
| TraesCS7A01G082100.1 | Wheat | nucleus | 37.81 | 24.49 |
| KXG22837 | Sorghum | mitochondrion | 29.33 | 23.99 |
| OQU83918 | Sorghum | cytosol, extracellular, nucleus | 15.9 | 23.94 |
| Os07t0169800-00 | Rice | nucleus | 42.05 | 23.8 |
| KXG38897 | Sorghum | plastid | 27.56 | 22.87 |
| OQU76454 | Sorghum | plastid | 16.25 | 22.66 |
| Zm00001d029981_P001 | Maize | plastid | 28.98 | 22.1 |
| Zm00001d031508_P001 | Maize | cytosol | 30.74 | 22.08 |
| Zm00001d007893_P001 | Maize | nucleus | 35.34 | 20.04 |
| CDY12276 | Canola | cytosol | 24.73 | 19.77 |
| CDY22569 | Canola | cytosol | 31.45 | 19.69 |
| EER98038 | Sorghum | plastid | 37.1 | 18.23 |
| OQU76453 | Sorghum | plastid | 15.9 | 14.95 |
| CDX83963 | Canola | cytosol | 0.0 | 0.0 |
| CDX96828 | Canola | cytosol | 0.0 | 0.0 |
| CDY70980 | Canola | cytosol | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:CDX98586 | EnsemblPlantsGene:GSBRNA2T00106266001 | Gene3D:3.30.420.10 | GO:A0A078EBQ2 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | InterPro:IPR036397 | InterPro:RNaseH-like_sf | InterPro:RNaseH_sf | InterPro:RNase_CAF1 | PANTHER:PTHR10797 |
| PANTHER:PTHR10797:SF3 | PFAM:PF04857 | ProteinID:CDX98586 | ProteinID:CDX98586.1 | SUPFAM:SSF53098 | UniParc:UPI0004EE211D |
| MapMan:16.8.2.1.2.2 | : | : | : | : | : |
Description
BnaC05g37890D
Coordinates
chrLK031905:+:1270728..1271579
Molecular Weight (calculated)
32418.5 Da
IEP (calculated)
4.819
GRAVY (calculated)
-0.251
Length
283 amino acids
Sequence
(BLAST)
(BLAST)
001: MTMMDPPDAD LSDRTGSIVI RSVWAENLDS EFELISRIVE DFPFISMDTE FPGVIHKAEP ALLRRGNPGY LYNLLKSNVD SLSLIQVGLT LSDADGNLPD
101: LGGDGRQFIW EFNFRDFDVD RDPHAADSIE LLRRHGIDFE RNRSEGVESE RFAELMMSSG LICNESVSWV TFHSAYDFGY LVKILTRREL PSSLGEFLRL
201: LRAFFGERVY DVKHMMRFCE RRLYGGLDRL ARSLEVNRAV GKCHQAGSDS LLTWHAFQRM RDLYFVEDGP EKHAGVLYGL EVF
101: LGGDGRQFIW EFNFRDFDVD RDPHAADSIE LLRRHGIDFE RNRSEGVESE RFAELMMSSG LICNESVSWV TFHSAYDFGY LVKILTRREL PSSLGEFLRL
201: LRAFFGERVY DVKHMMRFCE RRLYGGLDRL ARSLEVNRAV GKCHQAGSDS LLTWHAFQRM RDLYFVEDGP EKHAGVLYGL EVF
001: MIKSEADLSD VIVIRDVWAY NLESEFDLIR GIVEDYPFIS MDTEFPGVIY KADLDVLRRG NPNYLYNLLK SNVDALSLIQ VGLTLSDADG NLPDLGGQKN
101: RRYIWEFNFR DFDVERDPHA PDSIELLRRH GIDFERNRRE GVESERFAEL MMSSGLICNE SVSWVTFHSA YDFGYLVKIL TRRQLPVALR EFLGLLRAFF
201: GDRVYDVKHI MRFCEQRLYG GLDRVARSLE VNRAVGKCHQ AGSDSLLTWQ AFQRMRDLYF VEDGAEKHAG VLYGLEVF
101: RRYIWEFNFR DFDVERDPHA PDSIELLRRH GIDFERNRRE GVESERFAEL MMSSGLICNE SVSWVTFHSA YDFGYLVKIL TRRQLPVALR EFLGLLRAFF
201: GDRVYDVKHI MRFCEQRLYG GLDRVARSLE VNRAVGKCHQ AGSDSLLTWQ AFQRMRDLYF VEDGAEKHAG VLYGLEVF
Arabidopsis Description
CAF1-11Probable CCR4-associated factor 1 homolog 11 [Source:UniProtKB/Swiss-Prot;Acc:Q9FMS6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.