Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 2
- nucleus 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra005614.1-P | Field mustard | nucleus | 98.19 | 98.19 |
| CDY64914 | Canola | nucleus | 98.19 | 98.19 |
| AT2G32070.1 | Thale cress | nucleus | 90.58 | 90.91 |
| CDY63973 | Canola | nucleus | 81.52 | 82.12 |
| CDY53227 | Canola | nucleus | 81.52 | 82.12 |
| CDX87343 | Canola | cytosol | 81.52 | 81.82 |
| CDY39943 | Canola | cytosol | 80.8 | 81.09 |
| VIT_09s0070g00060.t01 | Wine grape | nucleus | 78.62 | 79.2 |
| PGSC0003DMT400036620 | Potato | nucleus | 78.62 | 79.2 |
| KRH47360 | Soybean | nucleus | 78.99 | 78.7 |
| Solyc03g117030.1.1 | Tomato | nucleus | 77.9 | 78.47 |
| GSMUA_Achr3P04600_001 | Banana | nucleus | 69.2 | 77.96 |
| PGSC0003DMT400073328 | Potato | nucleus | 76.81 | 77.66 |
| KRH44539 | Soybean | cytosol | 78.26 | 76.87 |
| GSMUA_Achr9P13270_001 | Banana | cytosol | 75.72 | 76.0 |
| KRH52356 | Soybean | nucleus | 75.0 | 75.82 |
| KRH61689 | Soybean | nucleus | 74.64 | 75.46 |
| PGSC0003DMT400058833 | Potato | cytosol | 74.64 | 75.18 |
| VIT_11s0037g00100.t01 | Wine grape | nucleus | 72.83 | 74.44 |
| Solyc11g045130.1.1 | Tomato | cytosol | 72.83 | 73.36 |
| Solyc06g068410.2.1 | Tomato | nucleus | 66.67 | 73.02 |
| VIT_04s0008g05850.t01 | Wine grape | nucleus | 71.38 | 72.16 |
| TraesCS5A01G225900.1 | Wheat | cytosol | 69.2 | 68.46 |
| TraesCS5B01G224400.1 | Wheat | cytosol | 69.2 | 68.46 |
| TraesCS5D01G233200.1 | Wheat | cytosol | 69.2 | 68.46 |
| EES05957 | Sorghum | nucleus | 71.01 | 68.06 |
| EER96736 | Sorghum | nucleus | 67.75 | 67.03 |
| Zm00001d020486_P001 | Maize | extracellular | 67.75 | 67.03 |
| Os09t0416800-01 | Rice | cytosol | 67.75 | 66.79 |
| Zm00001d052031_P001 | Maize | cytosol | 69.2 | 66.55 |
| CDX69796 | Canola | nucleus | 67.03 | 66.55 |
| TraesCS6A01G358700.1 | Wheat | cytosol | 69.57 | 66.44 |
| TraesCS6B01G391400.1 | Wheat | cytosol | 69.57 | 66.44 |
| TraesCS6D01G341500.1 | Wheat | cytosol | 69.57 | 66.44 |
| HORVU6Hr1G085410.1 | Barley | cytosol | 69.57 | 66.44 |
| CDX70376 | Canola | nucleus | 66.3 | 66.3 |
| CDX78405 | Canola | nucleus | 66.67 | 66.19 |
| Os02t0796300-01 | Rice | cytosol | 70.65 | 66.1 |
| CDX97069 | Canola | nucleus | 66.67 | 65.71 |
| GSMUA_Achr4P04150_001 | Banana | cytosol | 61.96 | 63.57 |
| GSMUA_Achr4P04220_001 | Banana | nucleus | 61.96 | 63.57 |
| GSMUA_Achr4P11450_001 | Banana | cytosol | 61.23 | 62.83 |
| GSMUA_Achr9P22440_001 | Banana | cytosol | 56.52 | 61.9 |
| TraesCS7B01G198900.1 | Wheat | nucleus | 63.04 | 59.18 |
| CDY35049 | Canola | nucleus | 59.06 | 59.06 |
| TraesCS7A01G297000.1 | Wheat | nucleus | 62.68 | 58.84 |
| TraesCS7D01G291400.1 | Wheat | nucleus | 62.68 | 58.84 |
| HORVU7Hr1G067520.3 | Barley | nucleus | 63.04 | 58.0 |
| Os08t0440300-03 | Rice | cytosol | 59.42 | 56.94 |
| GSMUA_Achr2P05120_001 | Banana | cytosol | 52.54 | 56.42 |
| KRH28796 | Soybean | nucleus | 19.93 | 56.12 |
| CDX70991 | Canola | cytosol, nucleus, plastid | 25.72 | 55.91 |
| EES13910 | Sorghum | nucleus | 56.88 | 54.9 |
| Zm00001d018378_P001 | Maize | nucleus | 15.22 | 53.16 |
| Zm00001d050433_P001 | Maize | nucleus | 53.62 | 52.86 |
| CDY47299 | Canola | nucleus | 51.81 | 52.57 |
| CDY35673 | Canola | nucleus | 51.09 | 52.22 |
| CDY08688 | Canola | cytosol | 52.54 | 51.97 |
| CDY09125 | Canola | nucleus | 50.72 | 51.85 |
| CDX98586 | Canola | nucleus | 51.45 | 50.18 |
| CDX92371 | Canola | nucleus | 51.09 | 49.82 |
| CDX88806 | Canola | cytosol | 50.36 | 48.77 |
| GSMUA_Achr1P10040_001 | Banana | nucleus | 48.91 | 48.39 |
| CDY12236 | Canola | cytosol, extracellular | 63.41 | 42.48 |
| Zm00001d032158_P002 | Maize | plastid | 57.25 | 39.7 |
| CDY33367 | Canola | cytosol, extracellular | 60.14 | 36.56 |
| CDX73277 | Canola | cytosol | 31.16 | 26.63 |
| CDY26919 | Canola | cytosol | 30.8 | 26.4 |
| CDY09974 | Canola | cytosol, mitochondrion, nucleus | 33.33 | 25.07 |
| CDY06214 | Canola | cytosol, mitochondrion, nucleus | 32.97 | 24.8 |
| CDY09972 | Canola | cytosol, mitochondrion, nucleus | 33.7 | 24.67 |
| CDY12276 | Canola | cytosol | 25.36 | 19.77 |
| CDY22569 | Canola | cytosol | 31.52 | 19.25 |
| CDX96828 | Canola | cytosol | 0.72 | 1.67 |
| CDX83963 | Canola | cytosol | 0.72 | 1.67 |
| CDY70980 | Canola | cytosol | 0.72 | 1.67 |
Protein Annotations
| EnsemblPlants:CDY12234 | EnsemblPlantsGene:GSBRNA2T00061268001 | Gene3D:3.30.420.10 | GO:A0A078FGU9 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | InterPro:IPR036397 | InterPro:RNaseH-like_sf | InterPro:RNaseH_sf | InterPro:RNase_CAF1 | PANTHER:PTHR10797 |
| PANTHER:PTHR10797:SF34 | PFAM:PF04857 | ProteinID:CDY12234 | ProteinID:CDY12234.1 | SUPFAM:SSF53098 | UniParc:UPI0004EBB231 |
| UniProt:A0A078FGU9 | MapMan:35.1 | : | : | : | : |
Description
BnaC04g12640DBnaC04g12640D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FGU9]
Coordinates
chrLK032018:+:656703..657533
Molecular Weight (calculated)
31815.1 Da
IEP (calculated)
4.926
GRAVY (calculated)
-0.161
Length
276 amino acids
Sequence
(BLAST)
(BLAST)
001: MSLLLKDDSI QIREVWHDNL ESEMALIRDI VDDFPFVAMD TEFPGIVCRP VGTFKTNTEY HYETLRTNVN LLKMIQLGLT FSDERGNLPT CGPDDKKYCI
101: WQFNFREFDL SSDIFAHDSI ELLRQSGIDF DNNKRNGVDS RRFAELLMSS GIVLNENVHW VTFHSGYDFG YLLKLLTCQD LPETQVGFFE MIRVYFPRVY
201: DIKHLMKFCN SLHGGLNKLA ELLEVERVGI CHQAGSDSLL TSCTFRKLQE NFFIGSMEKY SGVLYGLGVE NVQSVH
101: WQFNFREFDL SSDIFAHDSI ELLRQSGIDF DNNKRNGVDS RRFAELLMSS GIVLNENVHW VTFHSGYDFG YLLKLLTCQD LPETQVGFFE MIRVYFPRVY
201: DIKHLMKFCN SLHGGLNKLA ELLEVERVGI CHQAGSDSLL TSCTFRKLQE NFFIGSMEKY SGVLYGLGVE NVQSVH
001: MSLFLKDDSI QIREVWNDNL ESEMALIREV VDDFPFVAMD TEFPGIVCRP VGTFKTNTEY HYETLKTNVN ILKMIQLGLT FSDEKGNLPT CGTDNKYCIW
101: QFNFREFDLE SDIYATDSIE LLRQSGIDFV KNNEFGIDSK RFAELLMSSG IVLNENVHWV TFHSGYDFGY LLKLLTCQNL PETQTGFFEM ISVYFPRVYD
201: IKHLMKFCNS LHGGLNKLAE LLDVERVGIC HQAGSDSLLT SCTFRKLQEN FFIGSMEKYS GVLYGLGVEN GQIVH
101: QFNFREFDLE SDIYATDSIE LLRQSGIDFV KNNEFGIDSK RFAELLMSSG IVLNENVHWV TFHSGYDFGY LLKLLTCQNL PETQTGFFEM ISVYFPRVYD
201: IKHLMKFCNS LHGGLNKLAE LLDVERVGIC HQAGSDSLLT SCTFRKLQEN FFIGSMEKYS GVLYGLGVEN GQIVH
Arabidopsis Description
CAF1-7Probable CCR4-associated factor 1 homolog 7 [Source:UniProtKB/Swiss-Prot;Acc:Q9SKZ2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.