Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 3
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc06g068410.2.1 | Tomato | nucleus | 86.81 | 94.05 |
| VIT_09s0070g00060.t01 | Wine grape | nucleus | 89.01 | 88.69 |
| PGSC0003DMT400036620 | Potato | nucleus | 87.91 | 87.59 |
| PGSC0003DMT400058833 | Potato | cytosol | 80.22 | 79.93 |
| AT2G32070.1 | Thale cress | nucleus | 79.49 | 78.91 |
| Bra005614.1-P | Field mustard | nucleus | 78.02 | 77.17 |
| CDY64914 | Canola | nucleus | 78.02 | 77.17 |
| GSMUA_Achr9P13270_001 | Banana | cytosol | 77.66 | 77.09 |
| CDY12234 | Canola | nucleus | 77.66 | 76.81 |
| GSMUA_Achr3P04600_001 | Banana | nucleus | 68.86 | 76.73 |
| Bra008439.1-P | Field mustard | nucleus | 76.56 | 76.28 |
| CDY53227 | Canola | nucleus | 76.56 | 76.28 |
| CDY63973 | Canola | nucleus | 76.19 | 75.91 |
| Bra035152.1-P | Field mustard | cytosol | 75.82 | 75.27 |
| CDX87343 | Canola | cytosol | 75.82 | 75.27 |
| CDY39943 | Canola | cytosol | 75.46 | 74.91 |
| AT1G80780.3 | Thale cress | cytosol | 76.19 | 72.73 |
| AT5G10960.1 | Thale cress | nucleus | 71.79 | 70.76 |
| CDX69796 | Canola | nucleus | 71.43 | 70.14 |
| CDX70376 | Canola | nucleus | 70.7 | 69.93 |
| Bra009001.1-P | Field mustard | nucleus | 71.43 | 69.64 |
| CDX78405 | Canola | nucleus | 70.7 | 69.42 |
| Bra006083.1-P | Field mustard | nucleus | 70.7 | 69.42 |
| CDX97069 | Canola | nucleus | 71.06 | 69.29 |
| TraesCS5D01G233200.1 | Wheat | cytosol | 68.86 | 67.38 |
| TraesCS5B01G224400.1 | Wheat | cytosol | 68.86 | 67.38 |
| TraesCS5A01G225900.1 | Wheat | cytosol | 68.86 | 67.38 |
| Os09t0416800-01 | Rice | cytosol | 68.13 | 66.43 |
| EER96736 | Sorghum | nucleus | 67.77 | 66.31 |
| EES05957 | Sorghum | nucleus | 69.23 | 65.62 |
| Zm00001d020486_P001 | Maize | extracellular | 65.93 | 64.52 |
| Zm00001d052031_P001 | Maize | cytosol | 67.77 | 64.46 |
| HORVU6Hr1G085410.1 | Barley | cytosol | 68.13 | 64.36 |
| TraesCS6D01G341500.1 | Wheat | cytosol | 68.13 | 64.36 |
| TraesCS6B01G391400.1 | Wheat | cytosol | 68.13 | 64.36 |
| TraesCS6A01G358700.1 | Wheat | cytosol | 68.13 | 64.36 |
| GSMUA_Achr4P04150_001 | Banana | cytosol | 63.37 | 64.31 |
| GSMUA_Achr4P04220_001 | Banana | nucleus | 63.0 | 63.94 |
| Os02t0796300-01 | Rice | cytosol | 68.13 | 63.05 |
| GSMUA_Achr9P22440_001 | Banana | cytosol | 57.51 | 62.3 |
| GSMUA_Achr4P11450_001 | Banana | cytosol | 61.17 | 62.08 |
| TraesCS7B01G198900.1 | Wheat | nucleus | 63.74 | 59.18 |
| TraesCS7D01G291400.1 | Wheat | nucleus | 63.37 | 58.84 |
| TraesCS7A01G297000.1 | Wheat | nucleus | 63.37 | 58.84 |
| AT1G15920.2 | Thale cress | nucleus | 61.17 | 58.39 |
| HORVU7Hr1G067520.3 | Barley | nucleus | 63.74 | 58.0 |
| PGSC0003DMT400015091 | Potato | nucleus | 55.31 | 56.55 |
| GSMUA_Achr2P05120_001 | Banana | cytosol | 52.75 | 56.03 |
| EES13910 | Sorghum | nucleus | 57.88 | 55.24 |
| Os08t0440300-03 | Rice | cytosol | 58.24 | 55.21 |
| CDY35049 | Canola | nucleus | 55.68 | 55.07 |
| Zm00001d050433_P001 | Maize | nucleus | 56.04 | 54.64 |
| PGSC0003DMT400050487 | Potato | nucleus | 54.58 | 52.28 |
| Zm00001d018378_P001 | Maize | nucleus | 15.02 | 51.9 |
| Bra026093.1-P | Field mustard | nucleus | 55.68 | 50.84 |
| PGSC0003DMT400086131 | Potato | nucleus | 49.45 | 49.27 |
| PGSC0003DMT400096830 | Potato | nucleus | 49.08 | 48.91 |
| GSMUA_Achr1P10040_001 | Banana | nucleus | 49.82 | 48.75 |
| PGSC0003DMT400042215 | Potato | plastid | 49.45 | 47.37 |
| PGSC0003DMT400089988 | Potato | nucleus | 46.15 | 46.15 |
| PGSC0003DMT400094861 | Potato | nucleus | 26.74 | 41.01 |
| Zm00001d032158_P002 | Maize | plastid | 56.78 | 38.94 |
| CDY12236 | Canola | cytosol, extracellular | 58.24 | 38.59 |
| CDY33367 | Canola | cytosol, extracellular | 57.14 | 34.36 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400073328 | EnsemblPlantsGene:PGSC0003DMG400028497 | EntrezGene:102605889 | Gene3D:3.30.420.10 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | InterPro:IPR036397 | InterPro:RNaseH-like_sf | InterPro:RNaseH_sf | InterPro:RNase_CAF1 | PANTHER:PTHR10797 |
| PANTHER:PTHR10797:SF34 | PFAM:PF04857 | PGSC:PGSC0003DMG400028497 | RefSeq:XP_006356242.1 | SUPFAM:SSF53098 | UniParc:UPI000295193E |
| UniProt:M1CRU3 | MapMan:35.1 | : | : | : | : |
Description
Ccr4-associated factor [Source:PGSC_GENE;Acc:PGSC0003DMG400028497]
Coordinates
chr6:-:49986743..49988707
Molecular Weight (calculated)
31235.2 Da
IEP (calculated)
4.481
GRAVY (calculated)
-0.150
Length
273 amino acids
Sequence
(BLAST)
(BLAST)
001: MSLLPKSDSI HIREVWNDNL EEEFDLIREI VDDYPFIAMD TEFPGVVLRP VGNFKNSNDY HYQTLKDNVD LLKLIQLGLT FSDENGNLPK CGTDKYCIWQ
101: FNFCDFNPNE DVYANDSIEL LRQSGIDFKK NIENGIDAKR FGEILMSSGI VLNDNVYWVT FHSGYDFGYL LKILTCQDLP ETQEGFFNLI NMYFPVLYDV
201: KHLMKFCNSL HGGLNKLAEL LEVERVGVCH QAGSDSLLTA CTFRKLKENF FIGSLEKYAG VLYGLGVVEN GVH
101: FNFCDFNPNE DVYANDSIEL LRQSGIDFKK NIENGIDAKR FGEILMSSGI VLNDNVYWVT FHSGYDFGYL LKILTCQDLP ETQEGFFNLI NMYFPVLYDV
201: KHLMKFCNSL HGGLNKLAEL LEVERVGVCH QAGSDSLLTA CTFRKLKENF FIGSLEKYAG VLYGLGVVEN GVH
001: MSLFLKDDSI QIREVWNDNL ESEMALIREV VDDFPFVAMD TEFPGIVCRP VGTFKTNTEY HYETLKTNVN ILKMIQLGLT FSDEKGNLPT CGTDNKYCIW
101: QFNFREFDLE SDIYATDSIE LLRQSGIDFV KNNEFGIDSK RFAELLMSSG IVLNENVHWV TFHSGYDFGY LLKLLTCQNL PETQTGFFEM ISVYFPRVYD
201: IKHLMKFCNS LHGGLNKLAE LLDVERVGIC HQAGSDSLLT SCTFRKLQEN FFIGSMEKYS GVLYGLGVEN GQIVH
101: QFNFREFDLE SDIYATDSIE LLRQSGIDFV KNNEFGIDSK RFAELLMSSG IVLNENVHWV TFHSGYDFGY LLKLLTCQNL PETQTGFFEM ISVYFPRVYD
201: IKHLMKFCNS LHGGLNKLAE LLDVERVGIC HQAGSDSLLT SCTFRKLQEN FFIGSMEKYS GVLYGLGVEN GQIVH
Arabidopsis Description
CAF1-7Probable CCR4-associated factor 1 homolog 7 [Source:UniProtKB/Swiss-Prot;Acc:Q9SKZ2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.