Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 2
- nucleus 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra006083.1-P | Field mustard | nucleus | 98.19 | 97.48 |
| CDX78405 | Canola | nucleus | 98.19 | 97.48 |
| AT5G10960.1 | Thale cress | nucleus | 92.75 | 92.42 |
| CDX97069 | Canola | nucleus | 93.12 | 91.79 |
| CDX69796 | Canola | nucleus | 91.3 | 90.65 |
| KRH52356 | Soybean | nucleus | 74.28 | 75.09 |
| KRH61689 | Soybean | nucleus | 74.28 | 75.09 |
| VIT_09s0070g00060.t01 | Wine grape | nucleus | 71.38 | 71.9 |
| GSMUA_Achr3P04600_001 | Banana | nucleus | 63.77 | 71.84 |
| VIT_04s0008g05850.t01 | Wine grape | nucleus | 69.93 | 70.7 |
| PGSC0003DMT400073328 | Potato | nucleus | 69.93 | 70.7 |
| PGSC0003DMT400036620 | Potato | nucleus | 69.93 | 70.44 |
| Solyc03g117030.1.1 | Tomato | nucleus | 69.93 | 70.44 |
| GSMUA_Achr9P13270_001 | Banana | cytosol | 69.93 | 70.18 |
| KRH47360 | Soybean | nucleus | 69.93 | 69.68 |
| PGSC0003DMT400058833 | Potato | cytosol | 68.84 | 69.34 |
| KRH44539 | Soybean | cytosol | 69.93 | 68.68 |
| Solyc11g045130.1.1 | Tomato | cytosol | 67.75 | 68.25 |
| CDY39943 | Canola | cytosol | 67.75 | 68.0 |
| CDY53227 | Canola | nucleus | 67.39 | 67.88 |
| Solyc06g068410.2.1 | Tomato | nucleus | 61.96 | 67.86 |
| CDX87343 | Canola | cytosol | 67.39 | 67.64 |
| CDY63973 | Canola | nucleus | 67.03 | 67.52 |
| CDY64914 | Canola | nucleus | 66.67 | 66.67 |
| VIT_11s0037g00100.t01 | Wine grape | nucleus | 65.22 | 66.67 |
| CDY12234 | Canola | nucleus | 66.3 | 66.3 |
| KRH28796 | Soybean | nucleus | 23.19 | 65.31 |
| TraesCS5A01G225900.1 | Wheat | cytosol | 64.13 | 63.44 |
| TraesCS5B01G224400.1 | Wheat | cytosol | 64.13 | 63.44 |
| TraesCS5D01G233200.1 | Wheat | cytosol | 64.13 | 63.44 |
| Os09t0416800-01 | Rice | cytosol | 64.13 | 63.21 |
| EER96736 | Sorghum | nucleus | 62.68 | 62.01 |
| EES05957 | Sorghum | nucleus | 64.13 | 61.46 |
| Zm00001d052031_P001 | Maize | cytosol | 63.04 | 60.63 |
| Zm00001d020486_P001 | Maize | extracellular | 61.23 | 60.57 |
| TraesCS6A01G358700.1 | Wheat | cytosol | 62.32 | 59.52 |
| TraesCS6B01G391400.1 | Wheat | cytosol | 62.32 | 59.52 |
| TraesCS6D01G341500.1 | Wheat | cytosol | 62.32 | 59.52 |
| HORVU6Hr1G085410.1 | Barley | cytosol | 62.32 | 59.52 |
| Os02t0796300-01 | Rice | cytosol | 63.41 | 59.32 |
| GSMUA_Achr4P11450_001 | Banana | cytosol | 57.61 | 59.11 |
| GSMUA_Achr4P04150_001 | Banana | cytosol | 56.88 | 58.36 |
| GSMUA_Achr4P04220_001 | Banana | nucleus | 56.88 | 58.36 |
| GSMUA_Achr9P22440_001 | Banana | cytosol | 52.9 | 57.94 |
| CDX70991 | Canola | cytosol, nucleus, plastid | 25.72 | 55.91 |
| CDY35049 | Canola | nucleus | 55.8 | 55.8 |
| GSMUA_Achr2P05120_001 | Banana | cytosol | 51.81 | 55.64 |
| EES13910 | Sorghum | nucleus | 56.52 | 54.55 |
| Zm00001d050433_P001 | Maize | nucleus | 54.35 | 53.57 |
| TraesCS7B01G198900.1 | Wheat | nucleus | 56.88 | 53.4 |
| TraesCS7A01G297000.1 | Wheat | nucleus | 56.52 | 53.06 |
| TraesCS7D01G291400.1 | Wheat | nucleus | 56.52 | 53.06 |
| Os08t0440300-03 | Rice | cytosol | 55.07 | 52.78 |
| HORVU7Hr1G067520.3 | Barley | nucleus | 56.16 | 51.67 |
| CDY35673 | Canola | nucleus | 50.36 | 51.48 |
| CDY09125 | Canola | nucleus | 50.36 | 51.48 |
| CDY47299 | Canola | nucleus | 50.36 | 51.1 |
| CDY08688 | Canola | cytosol | 50.72 | 50.18 |
| CDX98586 | Canola | nucleus | 51.45 | 50.18 |
| CDX92371 | Canola | nucleus | 51.09 | 49.82 |
| CDX88806 | Canola | cytosol | 51.09 | 49.47 |
| Zm00001d018378_P001 | Maize | nucleus | 13.41 | 46.84 |
| GSMUA_Achr1P10040_001 | Banana | nucleus | 45.65 | 45.16 |
| Zm00001d032158_P002 | Maize | plastid | 56.52 | 39.2 |
| CDY12236 | Canola | cytosol, extracellular | 53.62 | 35.92 |
| CDY33367 | Canola | cytosol, extracellular | 56.88 | 34.58 |
| CDY26919 | Canola | cytosol | 32.25 | 27.64 |
| CDX73277 | Canola | cytosol | 32.25 | 27.55 |
| CDY06214 | Canola | cytosol, mitochondrion, nucleus | 30.8 | 23.16 |
| CDY09974 | Canola | cytosol, mitochondrion, nucleus | 30.8 | 23.16 |
| CDY09972 | Canola | cytosol, mitochondrion, nucleus | 31.16 | 22.81 |
| CDY22569 | Canola | cytosol | 31.52 | 19.25 |
| CDY12276 | Canola | cytosol | 24.64 | 19.21 |
| CDX96828 | Canola | cytosol | 0.72 | 1.67 |
| CDX83963 | Canola | cytosol | 0.72 | 1.67 |
| CDY70980 | Canola | cytosol | 0.72 | 1.67 |
Protein Annotations
| EnsemblPlants:CDX70376 | EnsemblPlantsGene:GSBRNA2T00140168001 | Gene3D:3.30.420.10 | GO:A0A078C082 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | InterPro:IPR036397 | InterPro:RNaseH-like_sf | InterPro:RNaseH_sf | InterPro:RNase_CAF1 | PANTHER:PTHR10797 |
| PANTHER:PTHR10797:SF31 | PFAM:PF04857 | ProteinID:CDX70376 | ProteinID:CDX70376.1 | SUPFAM:SSF53098 | UniParc:UPI0004EEDB97 |
| MapMan:35.1 | : | : | : | : | : |
Description
BnaC03g04600D
Coordinates
chrLK031791:-:113356..114364
Molecular Weight (calculated)
31289.5 Da
IEP (calculated)
4.557
GRAVY (calculated)
-0.053
Length
276 amino acids
Sequence
(BLAST)
(BLAST)
001: MAETLKEDSI TIREVWNDNL LEEFALIREI VDKFTYVAMD TEFPGVVLKP VETFKHNNDL NYRTLKENVD LLKLIQVGLT FSDEDGNLPT CGTDKFCVWQ
101: FNFREFNIGE DIYASESIEL LRQCGIDFKK NVESGIDVAR FGELMMSSGI VLNDSISWVT FHGGYDFGYL VKLLTCKELP VKQADFFKLL YVYFPTVYDI
201: KHLMTFCNGL FGGLNRLAEL MGVERVGVCH QAGSDSLLTL GSFRKLKERY FPGSTERYTG VLYGLGVEDG GTNVAN
101: FNFREFNIGE DIYASESIEL LRQCGIDFKK NVESGIDVAR FGELMMSSGI VLNDSISWVT FHGGYDFGYL VKLLTCKELP VKQADFFKLL YVYFPTVYDI
201: KHLMTFCNGL FGGLNRLAEL MGVERVGVCH QAGSDSLLTL GSFRKLKERY FPGSTERYTG VLYGLGVEDG GTNVAN
001: MAETLKEDSI MIREVWDYNL VEEFALIREI VDKFSYIAMD TEFPGVVLKP VATFKYNNDL NYRTLKENVD LLKLIQVGLT FSDENGNLPT CGTDKFCIWQ
101: FNFREFNIGE DIYASESIEL LRQCGIDFKK NIEKGIDVVR FGELMMSSGI VLNDAISWVT FHGGYDFGYL VKLLTCKELP LKQADFFKLL YVYFPTVYDI
201: KHLMTFCNGL FGGLNRLAEL MGVERVGICH QAGSDSLLTL GSFRKLKERY FPGSTEKYTG VLYGLGVEDG TTTTVAN
101: FNFREFNIGE DIYASESIEL LRQCGIDFKK NIEKGIDVVR FGELMMSSGI VLNDAISWVT FHGGYDFGYL VKLLTCKELP LKQADFFKLL YVYFPTVYDI
201: KHLMTFCNGL FGGLNRLAEL MGVERVGICH QAGSDSLLTL GSFRKLKERY FPGSTEKYTG VLYGLGVEDG TTTTVAN
Arabidopsis Description
CAF1-10Probable CCR4-associated factor 1 homolog 10 [Source:UniProtKB/Swiss-Prot;Acc:Q9LEU4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.