Factsheet for Zm00001d020486_P001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 1
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

extracellular: 20408568

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER96736	Sorghum	nucleus	95.7	95.7
TraesCS5D01G233200.1	Wheat	cytosol	88.89	88.89
TraesCS5A01G225900.1	Wheat	cytosol	88.89	88.89
TraesCS5B01G224400.1	Wheat	cytosol	88.53	88.53
Os09t0416800-01	Rice	cytosol	88.53	88.21
GSMUA_Achr9P13270_001	Banana	cytosol	72.4	73.45
GSMUA_Achr3P04600_001	Banana	nucleus	63.8	72.65
PGSC0003DMT400036620	Potato	nucleus	67.38	68.61
Solyc03g117030.1.1	Tomato	nucleus	66.67	67.88
CDY12234	Canola	nucleus	67.03	67.75
Zm00001d052031_P001	Maize	cytosol	69.53	67.6
KRH47360	Soybean	nucleus	67.03	67.51
KRH61689	Soybean	nucleus	65.95	67.4
KRH52356	Soybean	nucleus	65.95	67.4
Bra005614.1-P	Field mustard	nucleus	66.67	67.39
CDY64914	Canola	nucleus	66.67	67.39
PGSC0003DMT400058833	Potato	cytosol	65.95	67.15
VIT_04s0008g05850.t01	Wine grape	nucleus	65.59	67.03
VIT_09s0070g00060.t01	Wine grape	nucleus	65.59	66.79
Solyc11g045130.1.1	Tomato	cytosol	65.59	66.79
VIT_11s0037g00100.t01	Wine grape	nucleus	64.52	66.67
AT2G32070.1	Thale cress	nucleus	65.59	66.55
PGSC0003DMT400073328	Potato	nucleus	64.52	65.93
KRH44539	Soybean	cytosol	65.95	65.48
Bra035152.1-P	Field mustard	cytosol	64.52	65.45
CDX87343	Canola	cytosol	64.52	65.45
CDY63973	Canola	nucleus	64.16	65.33
CDY53227	Canola	nucleus	64.16	65.33
Bra008439.1-P	Field mustard	nucleus	64.16	65.33
CDY39943	Canola	cytosol	64.16	65.09
AT1G80780.3	Thale cress	cytosol	64.52	62.94
Solyc06g068410.2.1	Tomato	nucleus	55.91	61.9
CDX70376	Canola	nucleus	60.57	61.23
AT5G10960.1	Thale cress	nucleus	60.57	61.01
CDX78405	Canola	nucleus	60.57	60.79
Bra006083.1-P	Field mustard	nucleus	60.57	60.79
CDX97069	Canola	nucleus	60.93	60.71
CDX69796	Canola	nucleus	59.86	60.07
Bra009001.1-P	Field mustard	nucleus	60.22	60.0
Zm00001d018378_P001	Maize	nucleus	16.49	58.23
Zm00001d050433_P001	Maize	nucleus	58.42	58.21
KRH28796	Soybean	nucleus	19.71	56.12
AT1G15920.2	Thale cress	nucleus	56.63	55.24
CDY35049	Canola	nucleus	53.76	54.35
Bra026093.1-P	Field mustard	nucleus	53.76	50.17
Zm00001d032158_P002	Maize	plastid	63.44	44.47
Zm00001d001774_P001	Maize	nucleus	47.31	44.44
Zm00001d026657_P001	Maize	cytosol	46.95	43.81
CDY12236	Canola	cytosol, extracellular	51.25	34.71
CDY33367	Canola	cytosol, extracellular	54.48	33.48
Zm00001d007664_P001	Maize	extracellular, nucleus, plastid	14.7	31.54
Zm00001d007669_P001	Maize	extracellular, nucleus, plastid	14.7	31.54
Zm00001d007662_P001	Maize	extracellular, nucleus, plastid	14.7	31.54
Zm00001d007666_P001	Maize	extracellular, nucleus, plastid	15.41	31.39
Zm00001d048752_P001	Maize	nucleus, plasma membrane, plastid	31.18	29.59
Zm00001d048754_P001	Maize	nucleus, plasma membrane, plastid	31.18	29.59
Zm00001d048746_P001	Maize	nucleus, plasma membrane, plastid	30.47	29.11
Zm00001d048757_P001	Maize	nucleus, plasma membrane, plastid	30.47	29.11
Zm00001d048748_P001	Maize	nucleus, plasma membrane, plastid	30.11	28.67
Zm00001d007654_P001	Maize	nucleus, plasma membrane, plastid	28.67	27.78
Zm00001d002885_P001	Maize	plastid	31.18	27.27
Zm00001d031508_P001	Maize	cytosol	32.62	23.1
Zm00001d029981_P001	Maize	plastid	30.11	22.64
Zm00001d007893_P001	Maize	nucleus	36.2	20.24

Protein Annotations

EMBL:BT036086	EMBL:EU970228	EnsemblPlants:Zm00001d020486_P001	EnsemblPlants:Zm00001d020486_T001	EnsemblPlantsGene:Zm00001d020486	EntrezGene:100193739
Gene3D:3.30.420.10	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	InterPro:IPR036397	InterPro:RNaseH-like_sf
InterPro:RNaseH_sf	InterPro:RNase_CAF1	PANTHER:PTHR10797	PANTHER:PTHR10797:SF0	PFAM:PF04857	ProteinID:ONM54997.1
SUPFAM:SSF53098	UniParc:UPI00017B7041	UniProt:B4FG48	MapMan:35.1	:	:

Description

Probable CCR4-associated factor 1 homolog 11

Coordinates

chr7:+:118536132..118536971

Molecular Weight (calculated)

30786.7 Da

IEP (calculated)

4.709

GRAVY (calculated)

0.023

Length

279 amino acids

Sequence
(BLAST)

001: MATPAAEKPE DVEIREVWAD NLETEFAVIR DIVDDYPYVA MDTEFPGVVC RPLGTYKSAA EFNYATLKAN VDMLKLIQLG LTLSDEHGGL PALGPDGRPC
101: VWQFNFRGFD PRTDVAAADS IDLLRRSGID FSRHAADGVD SRCFAELLMS SGVVLNSDVH WVTFHSGYDF GYLLKLLTGT NLPDTLPGFF DLIKIYFPVI
201: YDIKHLMRFS NSLHGGLNKL AELLDVARVG ICHQAGSDSL LTALSFKKLK EAYFNGLTEK YAGVLYGLGF EGVETTSAH

Best Arabidopsis Sequence Match ( AT2G32070.1 )
(BLAST)

001: MSLFLKDDSI QIREVWNDNL ESEMALIREV VDDFPFVAMD TEFPGIVCRP VGTFKTNTEY HYETLKTNVN ILKMIQLGLT FSDEKGNLPT CGTDNKYCIW
101: QFNFREFDLE SDIYATDSIE LLRQSGIDFV KNNEFGIDSK RFAELLMSSG IVLNENVHWV TFHSGYDFGY LLKLLTCQNL PETQTGFFEM ISVYFPRVYD
201: IKHLMKFCNS LHGGLNKLAE LLDVERVGIC HQAGSDSLLT SCTFRKLQEN FFIGSMEKYS GVLYGLGVEN GQIVH

Arabidopsis Description

CAF1-7Probable CCR4-associated factor 1 homolog 7 [Source:UniProtKB/Swiss-Prot;Acc:Q9SKZ2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.