Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 3
- nucleus 1
- mitochondrion 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d002027_P002 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G44260.1 | Zm00001d002027_P002 | AT1G22920.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KXG22837 | Sorghum | mitochondrion | 70.53 | 65.03 |
| Zm00001d007654_P001 | Maize | nucleus, plasma membrane, plastid | 46.4 | 51.39 |
| Zm00001d048746_P001 | Maize | nucleus, plasma membrane, plastid | 46.4 | 50.68 |
| Zm00001d007664_P001 | Maize | extracellular, nucleus, plastid | 20.38 | 50.0 |
| Zm00001d007662_P001 | Maize | extracellular, nucleus, plastid | 20.38 | 50.0 |
| Zm00001d007669_P001 | Maize | extracellular, nucleus, plastid | 20.38 | 50.0 |
| Zm00001d048757_P001 | Maize | nucleus, plasma membrane, plastid | 45.45 | 49.66 |
| Zm00001d007666_P001 | Maize | extracellular, nucleus, plastid | 21.32 | 49.63 |
| Zm00001d048748_P001 | Maize | nucleus, plasma membrane, plastid | 45.14 | 49.15 |
| Zm00001d048754_P001 | Maize | nucleus, plasma membrane, plastid | 45.14 | 48.98 |
| Zm00001d048752_P001 | Maize | nucleus, plasma membrane, plastid | 45.14 | 48.98 |
| Os10t0123900-00 | Rice | extracellular, mitochondrion, nucleus | 39.19 | 45.45 |
| GSMUA_AchrUn_... | Banana | mitochondrion | 27.9 | 34.63 |
| VIT_06s0080g01090.t01 | Wine grape | nucleus | 30.09 | 34.53 |
| GSMUA_Achr8P18010_001 | Banana | mitochondrion | 27.9 | 34.36 |
| Solyc01g007840.2.1 | Tomato | plastid | 30.09 | 33.68 |
| PGSC0003DMT400042215 | Potato | plastid | 29.78 | 33.33 |
| AT3G44260.1 | Thale cress | cytosol | 29.15 | 33.21 |
| KRH25294 | Soybean | nucleus | 28.84 | 33.09 |
| CDY09125 | Canola | nucleus | 27.9 | 32.96 |
| CDY35673 | Canola | nucleus | 27.59 | 32.59 |
| Bra020179.1-P | Field mustard | nucleus | 27.59 | 32.59 |
| KRH30376 | Soybean | nucleus | 28.84 | 32.39 |
| Bra002400.1-P | Field mustard | nucleus | 28.53 | 32.38 |
| CDX92371 | Canola | nucleus | 28.53 | 32.16 |
| Bra035002.1-P | Field mustard | nucleus | 27.27 | 32.1 |
| CDY47299 | Canola | nucleus | 27.27 | 31.99 |
| CDX98586 | Canola | nucleus | 28.21 | 31.8 |
| Zm00001d001774_P001 | Maize | nucleus | 29.47 | 31.65 |
| AT5G22250.1 | Thale cress | cytosol | 27.27 | 31.3 |
| CDX88806 | Canola | cytosol | 27.9 | 31.23 |
| Zm00001d020486_P001 | Maize | extracellular | 27.27 | 31.18 |
| CDY08688 | Canola | cytosol | 27.27 | 31.18 |
| Zm00001d026657_P001 | Maize | cytosol | 29.15 | 31.1 |
| Bra006616.1-P | Field mustard | cytosol | 27.59 | 30.88 |
| KRH26669 | Soybean | endoplasmic reticulum, golgi | 29.47 | 30.42 |
| KRH22647 | Soybean | endoplasmic reticulum, vacuole | 28.84 | 29.49 |
| Zm00001d052031_P001 | Maize | cytosol | 26.02 | 28.92 |
| Zm00001d018378_P001 | Maize | nucleus | 6.9 | 27.85 |
| Zm00001d031508_P001 | Maize | cytosol | 33.86 | 27.41 |
| Zm00001d050433_P001 | Maize | nucleus | 23.51 | 26.79 |
| CDX70991 | Canola | cytosol, nucleus, plastid | 10.66 | 26.77 |
| Zm00001d029981_P001 | Maize | plastid | 29.78 | 25.61 |
| Zm00001d007893_P001 | Maize | nucleus | 38.56 | 24.65 |
| Zm00001d032158_P002 | Maize | plastid | 24.14 | 19.35 |
Protein Annotations
| EnsemblPlants:Zm00001d002885_P001 | EnsemblPlants:Zm00001d002885_T001 | EnsemblPlantsGene:Zm00001d002885 | EntrezGene:103648492 | Gene3D:3.30.420.10 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0005488 | InterPro:IPR036397 | InterPro:RNaseH-like_sf | InterPro:RNaseH_sf | InterPro:RNase_CAF1 |
| PANTHER:PTHR10797 | PANTHER:PTHR10797:SF9 | PFAM:PF04857 | ProteinID:ONM15578.1 | SEG:seg | SUPFAM:SSF53098 |
| UniParc:UPI000221C818 | UniProt:A0A1D6E505 | MapMan:35.1 | : | : | : |
Description
Putative CCR4-associated factor 1 homolog 3
Coordinates
chr2:-:25740464..25741423
Molecular Weight (calculated)
34580.6 Da
IEP (calculated)
5.597
GRAVY (calculated)
0.097
Length
319 amino acids
Sequence
(BLAST)
(BLAST)
001: MFSYAAPPIT YSPVPPPPPY AAGLLYPPPY YGGPVVPTPA VHVVQLRSVT ATNFAAELDL IGSLLQNYPY IVVDTEYPGT VHRPPAGRRD DDLSPDEWYA
101: MLKANVDELP PVQLGITLCD SHGNLPVVLD YGYGYTEGCW EVELSDFDIR RHRHAAQSVA FLRSQGVDFD AVRARGVGSA AFGAKLAEIL LASRGAGVGL
201: TWVAFGGAYD LAYLVKMIGG IGQPLPETRQ GFLERVRVLL GGRVFDARFM AENCGRADLR DVGLRSVAIN LGAVMPAADL PWLAGPKSLI VSRIHTIMKL
301: HVLSDDDTTA FQGIIDRLY
101: MLKANVDELP PVQLGITLCD SHGNLPVVLD YGYGYTEGCW EVELSDFDIR RHRHAAQSVA FLRSQGVDFD AVRARGVGSA AFGAKLAEIL LASRGAGVGL
201: TWVAFGGAYD LAYLVKMIGG IGQPLPETRQ GFLERVRVLL GGRVFDARFM AENCGRADLR DVGLRSVAIN LGAVMPAADL PWLAGPKSLI VSRIHTIMKL
301: HVLSDDDTTA FQGIIDRLY
001: MKQISSGEVW RWNKEVEMNS IRDCLKHCSS IAIDTEFPGC LKETPMDASE EIRYRDMKFN VDNTHLIQLG FTLFDRRGFA KTWEINLSDF DEHKCFKNDK
101: SIAFLKSNGL NLDKIREEGI GIDEFFRDFS QILTEKDGKI TWVNFQGSYD NAYLVKGLTG GKPLPETKEE FHETVQQLLG KFVFDVKKIA ESCSGLSSQF
201: GLQRIADVLQ MKRVGKAHHA GSDSELTARV FTKLTFDLLN SRKQSVRRVD HQQFQLEQQQ HQQFMMTRCY IPIPMPIPRP RPVMFAAHHQ NPYFGGGYFR
301: MPVQGMNYVL
101: SIAFLKSNGL NLDKIREEGI GIDEFFRDFS QILTEKDGKI TWVNFQGSYD NAYLVKGLTG GKPLPETKEE FHETVQQLLG KFVFDVKKIA ESCSGLSSQF
201: GLQRIADVLQ MKRVGKAHHA GSDSELTARV FTKLTFDLLN SRKQSVRRVD HQQFQLEQQQ HQQFMMTRCY IPIPMPIPRP RPVMFAAHHQ NPYFGGGYFR
301: MPVQGMNYVL
Arabidopsis Description
CAF1-3Putative CCR4-associated factor 1 homolog 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SFX6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.