Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d002027_P002 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G44260.1 | Zm00001d002027_P002 | AT1G22920.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d031508_P001 | Maize | cytosol | 59.72 | 75.63 |
| EER98038 | Sorghum | plastid | 57.31 | 49.65 |
| Zm00001d007662_P001 | Maize | extracellular, nucleus, plastid | 11.02 | 42.31 |
| Zm00001d007664_P001 | Maize | extracellular, nucleus, plastid | 11.02 | 42.31 |
| Zm00001d007669_P001 | Maize | extracellular, nucleus, plastid | 11.02 | 42.31 |
| Zm00001d007666_P001 | Maize | extracellular, nucleus, plastid | 11.22 | 40.88 |
| GSMUA_AchrUn_... | Banana | mitochondrion | 20.64 | 40.08 |
| GSMUA_Achr8P18010_001 | Banana | mitochondrion | 20.64 | 39.77 |
| Zm00001d002885_P001 | Maize | plastid | 24.65 | 38.56 |
| Bra020179.1-P | Field mustard | nucleus | 20.84 | 38.52 |
| VIT_06s0080g01090.t01 | Wine grape | nucleus | 20.64 | 37.05 |
| CDY09125 | Canola | nucleus | 20.04 | 37.04 |
| CDY35673 | Canola | nucleus | 20.04 | 37.04 |
| CDY47299 | Canola | nucleus | 20.04 | 36.76 |
| Os07t0169800-00 | Rice | nucleus | 36.67 | 36.6 |
| Bra035002.1-P | Field mustard | nucleus | 19.84 | 36.53 |
| KRH30376 | Soybean | nucleus | 20.64 | 36.27 |
| Zm00001d020486_P001 | Maize | extracellular | 20.24 | 36.2 |
| CDX92371 | Canola | nucleus | 20.44 | 36.04 |
| KRH25294 | Soybean | nucleus | 20.04 | 35.97 |
| Bra002400.1-P | Field mustard | nucleus | 20.24 | 35.94 |
| Solyc01g007840.2.1 | Tomato | plastid | 20.44 | 35.79 |
| Zm00001d048757_P001 | Maize | nucleus, plasma membrane, plastid | 20.84 | 35.62 |
| AT5G22250.1 | Thale cress | cytosol | 19.84 | 35.61 |
| CDX98586 | Canola | nucleus | 20.04 | 35.34 |
| Zm00001d048746_P001 | Maize | nucleus, plasma membrane, plastid | 20.64 | 35.27 |
| Zm00001d052031_P001 | Maize | cytosol | 20.24 | 35.19 |
| Zm00001d048754_P001 | Maize | nucleus, plasma membrane, plastid | 20.64 | 35.03 |
| Zm00001d048752_P001 | Maize | nucleus, plasma membrane, plastid | 20.64 | 35.03 |
| Zm00001d048748_P001 | Maize | nucleus, plasma membrane, plastid | 20.44 | 34.81 |
| CDY08688 | Canola | cytosol | 19.44 | 34.77 |
| PGSC0003DMT400042215 | Potato | plastid | 19.84 | 34.74 |
| Zm00001d007654_P001 | Maize | nucleus, plasma membrane, plastid | 20.04 | 34.72 |
| AT3G44260.1 | Thale cress | cytosol | 19.44 | 34.64 |
| KRH26669 | Soybean | endoplasmic reticulum, golgi | 21.24 | 34.3 |
| CDX88806 | Canola | cytosol | 19.24 | 33.68 |
| Bra006616.1-P | Field mustard | cytosol | 19.04 | 33.33 |
| KRH22647 | Soybean | endoplasmic reticulum, vacuole | 20.44 | 32.69 |
| Zm00001d001774_P001 | Maize | nucleus | 19.44 | 32.66 |
| Zm00001d026657_P001 | Maize | cytosol | 19.04 | 31.77 |
| Zm00001d018378_P001 | Maize | nucleus | 5.01 | 31.65 |
| CDX70991 | Canola | cytosol, nucleus, plastid | 7.82 | 30.71 |
| Zm00001d050433_P001 | Maize | nucleus | 16.83 | 30.0 |
| Zm00001d029981_P001 | Maize | plastid | 19.24 | 25.88 |
| Zm00001d032158_P002 | Maize | plastid | 19.64 | 24.62 |
Protein Annotations
| EnsemblPlants:Zm00001d007893_P001 | EnsemblPlants:Zm00001d007893_T001 | EnsemblPlantsGene:Zm00001d007893 | Gene3D:3.30.420.10 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | InterPro:IPR036397 | InterPro:RNaseH-like_sf | InterPro:RNaseH_sf | InterPro:RNase_CAF1 | PANTHER:PTHR10797 |
| PANTHER:PTHR10797:SF13 | PFAM:PF04857 | ProteinID:ONM27834.1 | SEG:seg | SUPFAM:SSF53098 | UniParc:UPI000221781F |
| UniProt:A0A1D6F9L9 | MapMan:35.1 | : | : | : | : |
Description
Putative CCR4-associated factor 1 homolog 3
Coordinates
chr2:+:241892858..241894357
Molecular Weight (calculated)
54486.8 Da
IEP (calculated)
8.964
GRAVY (calculated)
-0.269
Length
499 amino acids
Sequence
(BLAST)
(BLAST)
001: MSGSSSLWET GAPSLDTLAE SAATYAVMMS SQQQQQQQTA GPSRQAVYGA PVLPEIPTRF VYRPQVATDV MSGSSSLWKT GAPPHDTLAE SAAMYAATLS
101: SHQQQQQMAR PDRQAMYGAP VLPEIPTRFV YRPQTATDVM SSFSSLWETG APPPAAYAAM LSSQQQQMPT TRPGWQAAPR GAPVPPPMNM RFVPNTMPAA
201: DAMDVGSSAP MAPSDSSSER TPSPLQRVEV RQVWAHNFDS EAKLIESLLP KFRYVAVDTE FPGTVYRPAG PAYKLEPAER YRLLRCNVDA LHPVQLGLTL
301: FDAGCVLPGG HGGATRYVWQ FNFSDFDVRR HRHVVESVAA LRSRGVDLDR TRQYGVAAAA VFGPRLRKWT RAGLGRAGVV TSHGGYDLAY LVKMMFGTGF
401: RMSGSAAEFN AVVKSVLHRR RVFDIGEMAR LCPHEHLHRG LDSIAGQLNA ARFAADAARQ AGYDSLRTCY TFMKLREIYF DDDGKLAGVD GILAEVTAF
101: SHQQQQQMAR PDRQAMYGAP VLPEIPTRFV YRPQTATDVM SSFSSLWETG APPPAAYAAM LSSQQQQMPT TRPGWQAAPR GAPVPPPMNM RFVPNTMPAA
201: DAMDVGSSAP MAPSDSSSER TPSPLQRVEV RQVWAHNFDS EAKLIESLLP KFRYVAVDTE FPGTVYRPAG PAYKLEPAER YRLLRCNVDA LHPVQLGLTL
301: FDAGCVLPGG HGGATRYVWQ FNFSDFDVRR HRHVVESVAA LRSRGVDLDR TRQYGVAAAA VFGPRLRKWT RAGLGRAGVV TSHGGYDLAY LVKMMFGTGF
401: RMSGSAAEFN AVVKSVLHRR RVFDIGEMAR LCPHEHLHRG LDSIAGQLNA ARFAADAARQ AGYDSLRTCY TFMKLREIYF DDDGKLAGVD GILAEVTAF
001: MIKSEADLSD VIVIRDVWAY NLESEFDLIR GIVEDYPFIS MDTEFPGVIY KADLDVLRRG NPNYLYNLLK SNVDALSLIQ VGLTLSDADG NLPDLGGQKN
101: RRYIWEFNFR DFDVERDPHA PDSIELLRRH GIDFERNRRE GVESERFAEL MMSSGLICNE SVSWVTFHSA YDFGYLVKIL TRRQLPVALR EFLGLLRAFF
201: GDRVYDVKHI MRFCEQRLYG GLDRVARSLE VNRAVGKCHQ AGSDSLLTWQ AFQRMRDLYF VEDGAEKHAG VLYGLEVF
101: RRYIWEFNFR DFDVERDPHA PDSIELLRRH GIDFERNRRE GVESERFAEL MMSSGLICNE SVSWVTFHSA YDFGYLVKIL TRRQLPVALR EFLGLLRAFF
201: GDRVYDVKHI MRFCEQRLYG GLDRVARSLE VNRAVGKCHQ AGSDSLLTWQ AFQRMRDLYF VEDGAEKHAG VLYGLEVF
Arabidopsis Description
CAF1-11Probable CCR4-associated factor 1 homolog 11 [Source:UniProtKB/Swiss-Prot;Acc:Q9FMS6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.