Subcellular Localization
min:
: max
Winner_takes_all: plastid, extracellular, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 1
- extracellular 2
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d002027_P002 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G44260.1 | Zm00001d002027_P002 | AT1G22920.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d007664_P001 | Maize | extracellular, nucleus, plastid | 100.0 | 100.0 |
| Zm00001d007669_P001 | Maize | extracellular, nucleus, plastid | 100.0 | 100.0 |
| Zm00001d007666_P001 | Maize | extracellular, nucleus, plastid | 96.15 | 91.24 |
| Zm00001d048757_P001 | Maize | nucleus, plasma membrane, plastid | 50.0 | 22.26 |
| Zm00001d048754_P001 | Maize | nucleus, plasma membrane, plastid | 50.0 | 22.11 |
| Zm00001d048752_P001 | Maize | nucleus, plasma membrane, plastid | 50.0 | 22.11 |
| Zm00001d048746_P001 | Maize | nucleus, plasma membrane, plastid | 49.23 | 21.92 |
| Zm00001d048748_P001 | Maize | nucleus, plasma membrane, plastid | 49.23 | 21.84 |
| Zm00001d007654_P001 | Maize | nucleus, plasma membrane, plastid | 46.15 | 20.83 |
| Zm00001d002885_P001 | Maize | plastid | 50.0 | 20.38 |
| Os10t0123900-00 | Rice | extracellular, mitochondrion, nucleus | 43.08 | 20.36 |
| Bra020179.1-P | Field mustard | nucleus | 36.92 | 17.78 |
| Bra035002.1-P | Field mustard | nucleus | 36.92 | 17.71 |
| CDY47299 | Canola | nucleus | 36.92 | 17.65 |
| VIT_06s0080g01090.t01 | Wine grape | nucleus | 37.69 | 17.63 |
| Solyc01g007840.2.1 | Tomato | plastid | 38.46 | 17.54 |
| CDY35673 | Canola | nucleus | 36.15 | 17.41 |
| PGSC0003DMT400042215 | Potato | plastid | 37.69 | 17.19 |
| Bra002400.1-P | Field mustard | nucleus | 36.92 | 17.08 |
| CDY09125 | Canola | nucleus | 35.38 | 17.04 |
| KRH25294 | Soybean | nucleus | 36.15 | 16.91 |
| CDY08688 | Canola | cytosol | 36.15 | 16.85 |
| CDX92371 | Canola | nucleus | 36.15 | 16.61 |
| AT5G22250.1 | Thale cress | cytosol | 35.38 | 16.55 |
| AT3G44260.1 | Thale cress | cytosol | 35.38 | 16.43 |
| CDX98586 | Canola | nucleus | 35.38 | 16.25 |
| Bra006616.1-P | Field mustard | cytosol | 35.38 | 16.14 |
| CDX88806 | Canola | cytosol | 35.38 | 16.14 |
| KRH30376 | Soybean | nucleus | 33.85 | 15.49 |
| KRH26669 | Soybean | endoplasmic reticulum, golgi | 36.15 | 15.21 |
| KRH22647 | Soybean | endoplasmic reticulum, vacuole | 35.38 | 14.74 |
| Zm00001d020486_P001 | Maize | extracellular | 31.54 | 14.7 |
| Zm00001d052031_P001 | Maize | cytosol | 30.77 | 13.94 |
| Zm00001d018378_P001 | Maize | nucleus | 8.46 | 13.92 |
| GSMUA_Achr8P18010_001 | Banana | mitochondrion | 27.69 | 13.9 |
| Zm00001d001774_P001 | Maize | nucleus | 30.77 | 13.47 |
| Zm00001d026657_P001 | Maize | cytosol | 30.77 | 13.38 |
| GSMUA_AchrUn_... | Banana | mitochondrion | 26.15 | 13.23 |
| Zm00001d050433_P001 | Maize | nucleus | 26.92 | 12.5 |
| Zm00001d031508_P001 | Maize | cytosol | 35.38 | 11.68 |
| Zm00001d007893_P001 | Maize | nucleus | 42.31 | 11.02 |
| Zm00001d029981_P001 | Maize | plastid | 29.23 | 10.24 |
| Zm00001d032158_P002 | Maize | plastid | 28.46 | 9.3 |
| CDX70991 | Canola | cytosol, nucleus, plastid | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:Zm00001d007662_P001 | EnsemblPlants:Zm00001d007662_T001 | EnsemblPlantsGene:Zm00001d007662 | Gene3D:3.30.420.10 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | InterPro:IPR036397 | InterPro:RNaseH-like_sf | InterPro:RNaseH_sf | PANTHER:PTHR10797 | PANTHER:PTHR10797:SF9 |
| ProteinID:ONM27304.1 | ProteinID:ONM27305.1 | ProteinID:ONM27310.1 | SUPFAM:SSF53098 | UniParc:UPI0008429242 | UniProt:A0A1D6F7V9 |
| MapMan:35.1 | : | : | : | : | : |
Description
Putative CCR4-associated factor 1 homolog 3
Coordinates
chr2:+:237107524..237108405
Molecular Weight (calculated)
14473.4 Da
IEP (calculated)
8.222
GRAVY (calculated)
-0.124
Length
130 amino acids
Sequence
(BLAST)
(BLAST)
001: MAENMNSELN MIGSLLPLFP CITFDVEYAG TLHRSSAATR IAPSKQYALV KKNVDAVPIV MLGITLSNEY GNLPLTADGE GRLFQLAWEV TFSDFDPRRD
101: RHAPESVTFL RSQGVCLDKA RARGLSKWVR
101: RHAPESVTFL RSQGVCLDKA RARGLSKWVR
001: MAIIKPNRDL KPDGVTVVTR EVWAENLESE FELISEIIDD YPFISMDTEF PGVIFKSDLR FTNPDDLYTL LKANVDALSL IQVGLTLSDV NGNLPDLGDD
101: LHRGFIWEFN FRDFDVARDA HAPDSIELLR RQGIDFERNC RDGVESERFA ELMMSSGLVC NEEVSWVTFH SAYDFGYLMK ILTRRELPGA LGEFKRVMRV
201: LFGERVYDVK HMMKFCERRL FGGLDRVART LEVNRAVGKC HQAGSDSLLT WHAFQRMRDL YFVQDGPEKH AGVLYGLEVF
101: LHRGFIWEFN FRDFDVARDA HAPDSIELLR RQGIDFERNC RDGVESERFA ELMMSSGLVC NEEVSWVTFH SAYDFGYLMK ILTRRELPGA LGEFKRVMRV
201: LFGERVYDVK HMMKFCERRL FGGLDRVART LEVNRAVGKC HQAGSDSLLT WHAFQRMRDL YFVQDGPEKH AGVLYGLEVF
Arabidopsis Description
CAF1-9Probable CCR4-associated factor 1 homolog 9 [Source:UniProtKB/Swiss-Prot;Acc:Q9LXM2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.