Factsheet for Zm00001d032158_P002

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
nucleus 1
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	nucleus, plastid
ChloroP:	plastid
MultiLoc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	endoplasmic reticulum
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES13910	Sorghum	nucleus	68.09	94.76
Zm00001d050433_P001	Maize	nucleus	60.8	86.43
Zm00001d020486_P001	Maize	extracellular	44.47	63.44
Os08t0440300-03	Rice	cytosol	45.48	62.85
TraesCS7A01G297000.1	Wheat	nucleus	46.23	62.59
TraesCS7D01G291400.1	Wheat	nucleus	45.98	62.24
HORVU7Hr1G067520.3	Barley	nucleus	46.73	62.0
TraesCS7B01G198900.1	Wheat	nucleus	45.73	61.9
GSMUA_Achr3P04600_001	Banana	nucleus	37.69	61.22
GSMUA_Achr9P13270_001	Banana	cytosol	41.71	60.36
KRH61689	Soybean	nucleus	40.7	59.34
KRH52356	Soybean	nucleus	40.7	59.34
Zm00001d052031_P001	Maize	cytosol	42.46	58.88
Bra008439.1-P	Field mustard	nucleus	40.45	58.76
CDY63973	Canola	nucleus	40.45	58.76
CDY53227	Canola	nucleus	40.45	58.76
CDX87343	Canola	cytosol	40.45	58.55
Bra035152.1-P	Field mustard	cytosol	40.45	58.55
PGSC0003DMT400036620	Potato	nucleus	40.2	58.39
CDY39943	Canola	cytosol	40.2	58.18
Solyc03g117030.1.1	Tomato	nucleus	39.7	57.66
VIT_09s0070g00060.t01	Wine grape	nucleus	39.7	57.66
VIT_04s0008g05850.t01	Wine grape	nucleus	39.45	57.51
KRH47360	Soybean	nucleus	39.95	57.4
PGSC0003DMT400058833	Potato	cytosol	39.45	57.3
CDY64914	Canola	nucleus	39.7	57.25
CDY12234	Canola	nucleus	39.7	57.25
Bra005614.1-P	Field mustard	nucleus	39.7	57.25
AT2G32070.1	Thale cress	nucleus	39.45	57.09
AT5G10960.1	Thale cress	nucleus	39.7	57.04
PGSC0003DMT400073328	Potato	nucleus	38.94	56.78
CDX70376	Canola	nucleus	39.2	56.52
AT1G80780.3	Thale cress	cytosol	40.45	56.29
KRH44539	Soybean	cytosol	39.7	56.23
Solyc11g045130.1.1	Tomato	cytosol	38.69	56.2
CDX69796	Canola	nucleus	38.94	55.76
CDX78405	Canola	nucleus	38.94	55.76
Bra006083.1-P	Field mustard	nucleus	38.94	55.76
CDX97069	Canola	nucleus	39.2	55.71
Bra009001.1-P	Field mustard	nucleus	39.2	55.71
Solyc06g068410.2.1	Tomato	nucleus	35.18	55.56
VIT_11s0037g00100.t01	Wine grape	nucleus	37.44	55.19
AT1G15920.2	Thale cress	nucleus	38.44	53.5
CDY35049	Canola	nucleus	36.43	52.54
KRH28796	Soybean	nucleus	12.81	52.04
Zm00001d018378_P001	Maize	nucleus	10.05	50.63
Bra026093.1-P	Field mustard	nucleus	37.19	49.5
Zm00001d026657_P001	Maize	cytosol	28.89	38.46
Zm00001d001774_P001	Maize	nucleus	27.64	37.04
CDY12236	Canola	cytosol, extracellular	34.17	33.01
CDY33367	Canola	cytosol, extracellular	36.68	32.16
Zm00001d048754_P001	Maize	nucleus, plasma membrane, plastid	21.11	28.57
Zm00001d048752_P001	Maize	nucleus, plasma membrane, plastid	21.11	28.57
Zm00001d007666_P001	Maize	extracellular, nucleus, plastid	9.8	28.47
Zm00001d007662_P001	Maize	extracellular, nucleus, plastid	9.3	28.46
Zm00001d007669_P001	Maize	extracellular, nucleus, plastid	9.3	28.46
Zm00001d007664_P001	Maize	extracellular, nucleus, plastid	9.3	28.46
Zm00001d048746_P001	Maize	nucleus, plasma membrane, plastid	20.6	28.08
Zm00001d048757_P001	Maize	nucleus, plasma membrane, plastid	20.6	28.08
Zm00001d048748_P001	Maize	nucleus, plasma membrane, plastid	20.35	27.65
Zm00001d007654_P001	Maize	nucleus, plasma membrane, plastid	19.35	26.74
Zm00001d002885_P001	Maize	plastid	19.35	24.14
Zm00001d031508_P001	Maize	cytosol	20.6	20.81
Zm00001d029981_P001	Maize	plastid	18.84	20.22
Zm00001d007893_P001	Maize	nucleus	24.62	19.64

Protein Annotations

EnsemblPlants:Zm00001d032158_P002	EnsemblPlants:Zm00001d032158_T002	EnsemblPlantsGene:Zm00001d032158	Gene3D:3.30.420.10	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	InterPro:IPR036397	InterPro:RNaseH-like_sf	InterPro:RNaseH_sf	InterPro:RNase_CAF1	PANTHER:PTHR10797
PANTHER:PTHR10797:SF15	PFAM:PF04857	ProteinID:ONM04475.1	SEG:seg	SUPFAM:SSF53098	UniParc:UPI000842F431
UniProt:A0A1D6KNT8	MapMan:35.1	:	:	:	:

Description

Probable CCR4-associated factor 1 homolog 11

Coordinates

chr1:-:214730031..214731327

Molecular Weight (calculated)

43276.4 Da

IEP (calculated)

5.886

GRAVY (calculated)

0.056

Length

398 amino acids

Sequence
(BLAST)

001: MADVDTLELG SGSIPTHQIR PRFLASRSRP SHPPLSSHGL SPSLTLGPNA LPRVRARLLP LTLLLLLLPP LTLADRPRPP TSEALAAAGT ALPARRSSAR
101: SVSGFLDAPA APMAALPPAA EDPDAVEIRE VWASNLEEEF AVIRAVVDVY PYVAMDTEFP GFVVTPSAEY RFTCDRNYAA LEGNVNVLKL IQLGLTLSNG
201: AGALPPCGTG GRRCIWQFNF RGFDPHTDPS SSDSIDLLRR SGIDFDLFAA EGVDSTRFAE LMMSSGVVLN DDVQWVTFHS GHDFGYLLKL LTGREMPNTL
301: DEFLKLTKTF FPVMYDIKHL MKFCGGGLYG GLSKLGELLK IERVGISHQA GSDSLLTLQC FMKLKQLYLK ESVKLYDGVL FGLIPGEVEI KPVAPPIE

Best Arabidopsis Sequence Match ( AT1G80780.3 )
(BLAST)

001: MSLFLKDDSI QIREVWNDNL QEEMDLIRDV VDDFPYVAMD TEFPGIVVRP VGTFKSNADY HYETLKTNVN ILKMIQLGLT FSNEQGNLPT CGTDKYCIWQ
101: FNFREFDLDS DIFALDSIEL LKQSGIDLAK NTLDGIDSKR FAELLMSSGI VLNENVHWVT FHSGYDFGYL LKLLTCQNLP DSQTDFFKLI NVYFPTVYDI
201: KHLMKFCNSL HGGLNKLAEL LEVERVGICH QAGSDSLLTS CTFRKLKENF FVGPLHKYSG VLYGLGVENE ANGKNVSYRM DMVAWA

Arabidopsis Description

Polynucleotidyl transferase, ribonuclease H-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4HU15]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.