Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 3
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY53227 | Canola | nucleus | 100.0 | 100.0 |
| Bra035152.1-P | Field mustard | cytosol | 95.62 | 95.27 |
| AT1G80780.3 | Thale cress | cytosol | 91.97 | 88.11 |
| Bra005614.1-P | Field mustard | nucleus | 82.85 | 82.25 |
| VIT_09s0070g00060.t01 | Wine grape | nucleus | 79.93 | 79.93 |
| GSMUA_Achr3P04600_001 | Banana | nucleus | 70.8 | 79.18 |
| KRH47360 | Soybean | nucleus | 79.2 | 78.34 |
| PGSC0003DMT400036620 | Potato | nucleus | 77.37 | 77.37 |
| Solyc03g117030.1.1 | Tomato | nucleus | 77.37 | 77.37 |
| PGSC0003DMT400073328 | Potato | nucleus | 76.28 | 76.56 |
| KRH44539 | Soybean | cytosol | 78.1 | 76.16 |
| KRH52356 | Soybean | nucleus | 75.55 | 75.82 |
| KRH61689 | Soybean | nucleus | 75.55 | 75.82 |
| PGSC0003DMT400058833 | Potato | cytosol | 74.82 | 74.82 |
| GSMUA_Achr9P13270_001 | Banana | cytosol | 74.09 | 73.82 |
| VIT_04s0008g05850.t01 | Wine grape | nucleus | 72.99 | 73.26 |
| Solyc11g045130.1.1 | Tomato | cytosol | 72.99 | 72.99 |
| Solyc06g068410.2.1 | Tomato | nucleus | 66.79 | 72.62 |
| VIT_11s0037g00100.t01 | Wine grape | nucleus | 70.44 | 71.48 |
| Os09t0416800-01 | Rice | cytosol | 68.61 | 67.14 |
| TraesCS5A01G225900.1 | Wheat | cytosol | 68.25 | 67.03 |
| TraesCS5B01G224400.1 | Wheat | cytosol | 68.25 | 67.03 |
| TraesCS5D01G233200.1 | Wheat | cytosol | 68.25 | 67.03 |
| Bra006083.1-P | Field mustard | nucleus | 67.88 | 66.91 |
| EES05957 | Sorghum | nucleus | 69.34 | 65.97 |
| Bra009001.1-P | Field mustard | nucleus | 66.79 | 65.36 |
| TraesCS6A01G358700.1 | Wheat | cytosol | 68.61 | 65.05 |
| HORVU6Hr1G085410.1 | Barley | cytosol | 68.61 | 65.05 |
| TraesCS6B01G391400.1 | Wheat | cytosol | 68.61 | 65.05 |
| TraesCS6D01G341500.1 | Wheat | cytosol | 68.61 | 65.05 |
| EER96736 | Sorghum | nucleus | 66.06 | 64.87 |
| Zm00001d020486_P001 | Maize | extracellular | 65.33 | 64.16 |
| Os02t0796300-01 | Rice | cytosol | 68.98 | 64.07 |
| Zm00001d052031_P001 | Maize | cytosol | 66.79 | 63.76 |
| GSMUA_Achr4P11450_001 | Banana | cytosol | 60.58 | 61.71 |
| GSMUA_Achr4P04220_001 | Banana | nucleus | 60.22 | 61.34 |
| GSMUA_Achr4P04150_001 | Banana | cytosol | 60.22 | 61.34 |
| KRH28796 | Soybean | nucleus | 21.53 | 60.2 |
| GSMUA_Achr9P22440_001 | Banana | cytosol | 55.11 | 59.92 |
| TraesCS7D01G291400.1 | Wheat | nucleus | 64.23 | 59.86 |
| TraesCS7A01G297000.1 | Wheat | nucleus | 64.23 | 59.86 |
| TraesCS7B01G198900.1 | Wheat | nucleus | 63.87 | 59.52 |
| HORVU7Hr1G067520.3 | Barley | nucleus | 63.87 | 58.33 |
| EES13910 | Sorghum | nucleus | 58.39 | 55.94 |
| Os08t0440300-03 | Rice | cytosol | 57.66 | 54.86 |
| Bra026093.1-P | Field mustard | nucleus | 59.85 | 54.85 |
| Zm00001d050433_P001 | Maize | nucleus | 54.74 | 53.57 |
| GSMUA_Achr2P05120_001 | Banana | cytosol | 49.27 | 52.53 |
| Bra035002.1-P | Field mustard | nucleus | 49.63 | 50.18 |
| Bra020179.1-P | Field mustard | nucleus | 49.27 | 50.0 |
| Bra006616.1-P | Field mustard | cytosol | 51.09 | 49.12 |
| Bra002400.1-P | Field mustard | nucleus | 50.0 | 48.75 |
| Zm00001d018378_P001 | Maize | nucleus | 13.5 | 46.84 |
| GSMUA_Achr1P10040_001 | Banana | nucleus | 45.99 | 45.16 |
| Zm00001d032158_P002 | Maize | plastid | 58.76 | 40.45 |
| Bra032421.1-P | Field mustard | cytosol, mitochondrion, nucleus | 33.58 | 25.07 |
| Bra023214.1-P | Field mustard | cytosol | 23.72 | 11.78 |
Protein Annotations
| EnsemblPlants:Bra008439.1 | EnsemblPlants:Bra008439.1-P | EnsemblPlantsGene:Bra008439 | Gene3D:3.30.420.10 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | InterPro:IPR036397 | InterPro:RNaseH-like_sf | InterPro:RNaseH_sf | InterPro:RNase_CAF1 | PANTHER:PTHR10797 |
| PANTHER:PTHR10797:SF34 | PFAM:PF04857 | SUPFAM:SSF53098 | UniParc:UPI0002546A68 | UniProt:M4CW42 | MapMan:35.1 |
Description
AT1G80780 (E=1e-149) | CCR4-NOT transcription complex protein, putative
Coordinates
chrA02:-:15644761..15645585
Molecular Weight (calculated)
31108.2 Da
IEP (calculated)
4.414
GRAVY (calculated)
-0.001
Length
274 amino acids
Sequence
(BLAST)
(BLAST)
001: MSLFLKDDSI QIREVWNDNL LEEMDLIRQV VDDFPYVAMD TEFPGIVVRP VGTFKSNADY HYETLKLNVN ILSIIQLGLT FSNEQGNLPT CGTDKYCIWQ
101: FNFREFDLDS DIFAVDSIDL LKQSGIDFAK NTQEGIESNR FAELLMSSGI VLNENVHWVT FHSGYDFGYL LKLLTCQDLP DSQTGFFQLI NVYFPMVYDI
201: KHLMKFCNSL HGGLNKLAEL LEVERVGICH QAGSDSLLTS CTFRKLKENF FAGPLQKYAG VLYGLGVENG QVAL
101: FNFREFDLDS DIFAVDSIDL LKQSGIDFAK NTQEGIESNR FAELLMSSGI VLNENVHWVT FHSGYDFGYL LKLLTCQDLP DSQTGFFQLI NVYFPMVYDI
201: KHLMKFCNSL HGGLNKLAEL LEVERVGICH QAGSDSLLTS CTFRKLKENF FAGPLQKYAG VLYGLGVENG QVAL
001: MSLFLKDDSI QIREVWNDNL QEEMDLIRDV VDDFPYVAMD TEFPGIVVRP VGTFKSNADY HYETLKTNVN ILKMIQLGLT FSNEQGNLPT CGTDKYCIWQ
101: FNFREFDLDS DIFALDSIEL LKQSGIDLAK NTLDGIDSKR FAELLMSSGI VLNENVHWVT FHSGYDFGYL LKLLTCQNLP DSQTDFFKLI NVYFPTVYDI
201: KHLMKFCNSL HGGLNKLAEL LEVERVGICH QAGSDSLLTS CTFRKLKENF FVGPLHKYSG VLYGLGVENG QVAI
101: FNFREFDLDS DIFALDSIEL LKQSGIDLAK NTLDGIDSKR FAELLMSSGI VLNENVHWVT FHSGYDFGYL LKLLTCQNLP DSQTDFFKLI NVYFPTVYDI
201: KHLMKFCNSL HGGLNKLAEL LEVERVGICH QAGSDSLLTS CTFRKLKENF FVGPLHKYSG VLYGLGVENG QVAI
Arabidopsis Description
Polynucleotidyl transferase, ribonuclease H-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4HU15]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.