CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 3
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	cytosol
EpiLoc:	cytosol
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d052031_P001	Maize	cytosol	94.1	94.43
TraesCS6D01G341500.1	Wheat	cytosol	93.4	93.08
TraesCS6B01G391400.1	Wheat	cytosol	93.4	93.08
TraesCS6A01G358700.1	Wheat	cytosol	93.4	93.08
HORVU6Hr1G085410.1	Barley	cytosol	93.4	93.08
Os02t0796300-01	Rice	cytosol	95.14	92.88
GSMUA_Achr9P13270_001	Banana	cytosol	74.65	78.18
GSMUA_Achr3P04600_001	Banana	nucleus	65.28	76.73
KRH61689	Soybean	nucleus	70.14	73.99
KRH52356	Soybean	nucleus	69.44	73.26
VIT_09s0070g00060.t01	Wine grape	nucleus	69.44	72.99
EER96736	Sorghum	nucleus	70.14	72.4
KRH47360	Soybean	nucleus	69.44	72.2
PGSC0003DMT400036620	Potato	nucleus	68.4	71.9
Solyc03g117030.1.1	Tomato	nucleus	68.06	71.53
KRH44539	Soybean	cytosol	69.44	71.17
PGSC0003DMT400058833	Potato	cytosol	67.71	71.17
CDY12234	Canola	nucleus	68.06	71.01
CDY64914	Canola	nucleus	68.06	71.01
Bra005614.1-P	Field mustard	nucleus	68.06	71.01
Solyc11g045130.1.1	Tomato	cytosol	66.67	70.07
VIT_04s0008g05850.t01	Wine grape	nucleus	66.32	69.96
AT2G32070.1	Thale cress	nucleus	66.67	69.82
CDY53227	Canola	nucleus	65.97	69.34
Bra008439.1-P	Field mustard	nucleus	65.97	69.34
PGSC0003DMT400073328	Potato	nucleus	65.62	69.23
Bra035152.1-P	Field mustard	cytosol	65.97	69.09
CDX87343	Canola	cytosol	65.97	69.09
CDY63973	Canola	nucleus	65.62	68.98
CDY39943	Canola	cytosol	65.62	68.73
VIT_11s0037g00100.t01	Wine grape	nucleus	63.89	68.15
AT1G80780.3	Thale cress	cytosol	66.32	66.78
Solyc06g068410.2.1	Tomato	nucleus	57.99	66.27
CDX78405	Canola	nucleus	62.5	64.75
Bra006083.1-P	Field mustard	nucleus	62.5	64.75
CDX70376	Canola	nucleus	61.46	64.13
CDX97069	Canola	nucleus	61.81	63.57
AT5G10960.1	Thale cress	nucleus	60.76	63.18
CDX69796	Canola	nucleus	60.42	62.59
Bra009001.1-P	Field mustard	nucleus	60.76	62.5
KRH28796	Soybean	nucleus	20.14	59.18
AT1G15920.2	Thale cress	nucleus	57.64	58.04
EES13910	Sorghum	nucleus	57.29	57.69
CDY35049	Canola	nucleus	52.08	54.35
Bra026093.1-P	Field mustard	nucleus	52.43	50.5
EES11684	Sorghum	nucleus	42.36	36.42
CDY12236	Canola	cytosol, extracellular	51.74	36.16
CDY33367	Canola	cytosol, extracellular	54.17	34.36
EER87806	Sorghum	cytosol, nucleus, plasma membrane	35.42	32.28
EES10179	Sorghum	plasma membrane, plastid	27.43	28.11
EES09326	Sorghum	mitochondrion, nucleus	28.12	27.18
KXG20050	Sorghum	plastid	25.0	26.77
OQU83919	Sorghum	mitochondrion	21.18	25.0
KXG38897	Sorghum	plastid	27.78	23.46
OQU76452	Sorghum	plastid	13.19	23.31
OQU83918	Sorghum	cytosol, extracellular, nucleus	14.58	22.34
KXG22837	Sorghum	mitochondrion	25.35	21.1
OQU76454	Sorghum	plastid	14.58	20.69
EER98038	Sorghum	plastid	36.46	18.23
OQU76453	Sorghum	plastid	15.97	15.28

Protein Annotations

Gene3D:3.30.420.10	MapMan:35.1	EntrezGene:8056387	UniProt:C5XUG9	EnsemblPlants:EES05957	ProteinID:EES05957
ProteinID:EES05957.1	GO:GO:0000932	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004518
GO:GO:0004535	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006139	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009058
GO:GO:0009987	GO:GO:0016787	GO:GO:0017148	GO:GO:0019538	GO:GO:0030015	GO:GO:0043928
GO:GO:0090503	InterPro:IPR036397	PFAM:PF04857	PANTHER:PTHR10797	PANTHER:PTHR10797:SF33	InterPro:RNaseH-like_sf
InterPro:RNaseH_sf	InterPro:RNase_CAF1	EnsemblPlantsGene:SORBI_3004G330700	SUPFAM:SSF53098	unigene:Sbi.8097	UniParc:UPI0001A85B78
RefSeq:XP_002452981.1	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr4:+:66404801..66407552

Molecular Weight (calculated)

32309.4 Da

IEP (calculated)

4.637

GRAVY (calculated)

-0.086

Length

288 amino acids

Sequence
(BLAST)

001: MAMSDLTATM IPKPDEADDD ESVEIREVWA DNLEEEFALI RDIVDEFPFV AMDTEFPGIV CRPVGAFRSP ADYNYATLKA NVDMLHLIQL GLTFSGPRGE
101: LPALGAGRRR CVWQFNFREF DDARDIFASD SIELLRRSGI DFRRNAERGV DARRFAELLM SSGVVLNDSV YWVTFHAGYD FGYLLKILTC SSLPDTQAGF
201: FKLMKIYFPT VYDIKHLMKF CNSLHGGLNK LAELLDVERV GESHQAGSDS LVTSCAFWKL KDSFFAGSTE KYAGVLYGLN AENGVSAH

Best Arabidopsis Sequence Match ( AT2G32070.1 )
(BLAST)

001: MSLFLKDDSI QIREVWNDNL ESEMALIREV VDDFPFVAMD TEFPGIVCRP VGTFKTNTEY HYETLKTNVN ILKMIQLGLT FSDEKGNLPT CGTDNKYCIW
101: QFNFREFDLE SDIYATDSIE LLRQSGIDFV KNNEFGIDSK RFAELLMSSG IVLNENVHWV TFHSGYDFGY LLKLLTCQNL PETQTGFFEM ISVYFPRVYD
201: IKHLMKFCNS LHGGLNKLAE LLDVERVGIC HQAGSDSLLT SCTFRKLQEN FFIGSMEKYS GVLYGLGVEN GQIVH

Arabidopsis Description

CAF1-7Probable CCR4-associated factor 1 homolog 7 [Source:UniProtKB/Swiss-Prot;Acc:Q9SKZ2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.