Subcellular Localization
min:
: max
Winner_takes_all: extracellular, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- nucleus 1
- mitochondrion 1
- cytosol 1
- extracellular 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| KXG27287 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G44260.1 | KXG27287 | AT1G22920.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| OQU83919 | Sorghum | mitochondrion | 84.57 | 65.16 |
| EES10179 | Sorghum | plasma membrane, plastid | 82.98 | 55.52 |
| Zm00001d007654_P001 | Maize | nucleus, plasma membrane, plastid | 66.49 | 43.4 |
| Zm00001d048757_P001 | Maize | nucleus, plasma membrane, plastid | 62.77 | 40.41 |
| Zm00001d048754_P001 | Maize | nucleus, plasma membrane, plastid | 62.77 | 40.14 |
| Zm00001d048752_P001 | Maize | nucleus, plasma membrane, plastid | 62.77 | 40.14 |
| Zm00001d048746_P001 | Maize | nucleus, plasma membrane, plastid | 62.23 | 40.07 |
| Zm00001d048748_P001 | Maize | nucleus, plasma membrane, plastid | 62.23 | 39.93 |
| Os10t0123900-00 | Rice | extracellular, mitochondrion, nucleus | 35.64 | 24.36 |
| KXG22837 | Sorghum | mitochondrion | 42.55 | 23.12 |
| CDX70991 | Canola | cytosol, nucleus, plastid | 13.3 | 19.68 |
| GSMUA_Achr8P18010_001 | Banana | mitochondrion | 26.06 | 18.92 |
| GSMUA_AchrUn_... | Banana | mitochondrion | 25.53 | 18.68 |
| Bra035002.1-P | Field mustard | nucleus | 25.0 | 17.34 |
| CDY08688 | Canola | cytosol | 25.53 | 17.2 |
| KRH25294 | Soybean | nucleus | 25.0 | 16.91 |
| VIT_06s0080g01090.t01 | Wine grape | nucleus | 25.0 | 16.91 |
| Solyc01g007840.2.1 | Tomato | plastid | 25.53 | 16.84 |
| PGSC0003DMT400042215 | Potato | plastid | 25.53 | 16.84 |
| EER87806 | Sorghum | cytosol, nucleus, plasma membrane | 28.19 | 16.77 |
| CDY47299 | Canola | nucleus | 23.94 | 16.54 |
| EES13910 | Sorghum | nucleus | 24.47 | 16.08 |
| AT3G44260.1 | Thale cress | cytosol | 23.94 | 16.07 |
| CDY09125 | Canola | nucleus | 22.87 | 15.93 |
| CDY35673 | Canola | nucleus | 22.87 | 15.93 |
| CDX98586 | Canola | nucleus | 23.94 | 15.9 |
| KRH30376 | Soybean | nucleus | 23.94 | 15.85 |
| Bra002400.1-P | Field mustard | nucleus | 23.4 | 15.66 |
| KXG20050 | Sorghum | plastid | 22.34 | 15.61 |
| CDX92371 | Canola | nucleus | 23.4 | 15.55 |
| EER96736 | Sorghum | nucleus | 22.87 | 15.41 |
| Bra020179.1-P | Field mustard | nucleus | 21.81 | 15.19 |
| EES09326 | Sorghum | mitochondrion, nucleus | 23.94 | 15.1 |
| AT5G22250.1 | Thale cress | cytosol | 21.81 | 14.75 |
| EES05957 | Sorghum | nucleus | 22.34 | 14.58 |
| KRH22647 | Soybean | endoplasmic reticulum, vacuole | 23.4 | 14.1 |
| KXG38897 | Sorghum | plastid | 25.53 | 14.08 |
| CDX88806 | Canola | cytosol | 21.28 | 14.04 |
| EES11684 | Sorghum | nucleus | 25.0 | 14.03 |
| Bra006616.1-P | Field mustard | cytosol | 20.74 | 13.68 |
| KRH26669 | Soybean | endoplasmic reticulum, golgi | 22.34 | 13.59 |
| OQU76452 | Sorghum | plastid | 8.51 | 9.82 |
| EER98038 | Sorghum | plastid | 26.6 | 8.68 |
| OQU76454 | Sorghum | plastid | 9.04 | 8.37 |
| OQU76453 | Sorghum | plastid | 11.7 | 7.31 |
Protein Annotations
| EnsemblPlants:OQU83918 | EnsemblPlantsGene:SORBI_3005G199000 | Gene3D:3.30.420.10 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR036397 | InterPro:RNaseH-like_sf | InterPro:RNaseH_sf | PANTHER:PTHR10797 | PANTHER:PTHR10797:SF9 | ProteinID:OQU83918 |
| ProteinID:OQU83918.1 | SEG:seg | SUPFAM:SSF53098 | UniParc:UPI000B8BAAC5 | UniProt:A0A1Z5RJL3 | MapMan:35.2 |
Description
hypothetical protein
Coordinates
chr5:-:68437248..68438056
Molecular Weight (calculated)
20169.0 Da
IEP (calculated)
7.162
GRAVY (calculated)
0.381
Length
188 amino acids
Sequence
(BLAST)
(BLAST)
001: MFPAPPPAPM IPARVMVGRL QFVSMGKENI TTELERIKEL LPRYCYVAID TEYPGTVHGG FNFAHTLVHD VPSTDFVGKL AEVLAKVPQP LMWVVVGGAF
101: DFAHMVKMLS GGQPLSKTHG EFMAQGICSE LCAGGLRTVA AILGMSQLIL LPPSLAGPKS HTACCIFNVM RLVVHGGASY DGLIDGIY
101: DFAHMVKMLS GGQPLSKTHG EFMAQGICSE LCAGGLRTVA AILGMSQLIL LPPSLAGPKS HTACCIFNVM RLVVHGGASY DGLIDGIY
001: MKQISSGEVW RWNKEVEMNS IRDCLKHCSS IAIDTEFPGC LKETPMDASE EIRYRDMKFN VDNTHLIQLG FTLFDRRGFA KTWEINLSDF DEHKCFKNDK
101: SIAFLKSNGL NLDKIREEGI GIDEFFRDFS QILTEKDGKI TWVNFQGSYD NAYLVKGLTG GKPLPETKEE FHETVQQLLG KFVFDVKKIA ESCSGLSSQF
201: GLQRIADVLQ MKRVGKAHHA GSDSELTARV FTKLTFDLLN SRKQSVRRVD HQQFQLEQQQ HQQFMMTRCY IPIPMPIPRP RPVMFAAHHQ NPYFGGGYFR
301: MPVQGMNYVL
101: SIAFLKSNGL NLDKIREEGI GIDEFFRDFS QILTEKDGKI TWVNFQGSYD NAYLVKGLTG GKPLPETKEE FHETVQQLLG KFVFDVKKIA ESCSGLSSQF
201: GLQRIADVLQ MKRVGKAHHA GSDSELTARV FTKLTFDLLN SRKQSVRRVD HQQFQLEQQQ HQQFMMTRCY IPIPMPIPRP RPVMFAAHHQ NPYFGGGYFR
301: MPVQGMNYVL
Arabidopsis Description
CAF1-3Putative CCR4-associated factor 1 homolog 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SFX6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.