CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, plastid

Predictor Summary:

nucleus 3
cytosol 1
plastid 3
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane, plastid
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
iPSORT:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
KXG27287

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G44260.1	KXG27287	AT1G22920.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU83918	Sorghum	cytosol, extracellular, nucleus	55.52	82.98
OQU83919	Sorghum	mitochondrion	69.75	80.33
Zm00001d007654_P001	Maize	nucleus, plasma membrane, plastid	75.09	73.26
Zm00001d048748_P001	Maize	nucleus, plasma membrane, plastid	70.46	67.58
Zm00001d048746_P001	Maize	nucleus, plasma membrane, plastid	70.11	67.47
Zm00001d048757_P001	Maize	nucleus, plasma membrane, plastid	69.39	66.78
Zm00001d048754_P001	Maize	nucleus, plasma membrane, plastid	69.39	66.33
Zm00001d048752_P001	Maize	nucleus, plasma membrane, plastid	69.39	66.33
Os10t0123900-00	Rice	extracellular, mitochondrion, nucleus	40.93	41.82
KXG22837	Sorghum	mitochondrion	48.4	39.31
GSMUA_Achr8P18010_001	Banana	mitochondrion	32.03	34.75
GSMUA_AchrUn_...	Banana	mitochondrion	31.67	34.63
Bra035002.1-P	Field mustard	nucleus	33.1	34.32
CDY47299	Canola	nucleus	32.38	33.46
CDY08688	Canola	cytosol	32.74	32.97
AT3G44260.1	Thale cress	cytosol	32.74	32.86
KRH25294	Soybean	nucleus	32.38	32.73
CDY35673	Canola	nucleus	30.96	32.22
CDY09125	Canola	nucleus	30.96	32.22
Bra020179.1-P	Field mustard	nucleus	30.61	31.85
CDX98586	Canola	nucleus	31.67	31.45
Bra002400.1-P	Field mustard	nucleus	31.32	31.32
VIT_06s0080g01090.t01	Wine grape	nucleus	30.96	31.3
CDX92371	Canola	nucleus	31.32	31.1
KRH30376	Soybean	nucleus	30.61	30.28
AT5G22250.1	Thale cress	cytosol	29.89	30.22
Solyc01g007840.2.1	Tomato	plastid	29.89	29.47
PGSC0003DMT400042215	Potato	plastid	29.54	29.12
EER87806	Sorghum	cytosol, nucleus, plasma membrane	32.38	28.8
CDX88806	Canola	cytosol	29.18	28.77
EES13910	Sorghum	nucleus	29.18	28.67
Bra006616.1-P	Field mustard	cytosol	28.83	28.42
CDX70991	Canola	cytosol, nucleus, plastid	12.81	28.35
EES09326	Sorghum	mitochondrion, nucleus	29.89	28.19
EER96736	Sorghum	nucleus	27.76	27.96
KRH22647	Soybean	endoplasmic reticulum, vacuole	30.61	27.56
KXG20050	Sorghum	plastid	26.33	27.51
KRH26669	Soybean	endoplasmic reticulum, golgi	30.25	27.51
EES05957	Sorghum	nucleus	28.11	27.43
EES11684	Sorghum	nucleus	29.89	25.07
KXG38897	Sorghum	plastid	29.89	24.63
OQU76452	Sorghum	plastid	13.52	23.31
OQU76454	Sorghum	plastid	14.23	19.7
EER98038	Sorghum	plastid	33.45	16.32
OQU76453	Sorghum	plastid	15.66	14.62

Protein Annotations

Gene3D:3.30.420.10	MapMan:35.1	UniProt:C5Y711	EnsemblPlants:EES10179	ProteinID:EES10179	ProteinID:EES10179.1
GO:GO:0000932	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004518	GO:GO:0004535
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006139
GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009058	GO:GO:0009987
GO:GO:0016787	GO:GO:0017148	GO:GO:0019538	GO:GO:0030015	GO:GO:0043928	GO:GO:0090503
InterPro:IPR036397	PFAM:PF04857	PANTHER:PTHR10797	PANTHER:PTHR10797:SF9	InterPro:RNaseH-like_sf	InterPro:RNaseH_sf
InterPro:RNase_CAF1	EnsemblPlantsGene:SORBI_3005G199101	SUPFAM:SSF53098	UniParc:UPI0001A86BEA	RefSeq:XP_002451191.1	SEG:seg

Description

hypothetical protein

Coordinates

chr5:-:68449321..68450181

Molecular Weight (calculated)

30511.3 Da

IEP (calculated)

6.167

GRAVY (calculated)

0.167

Length

281 amino acids

Sequence
(BLAST)

001: MFPAPPPVPM IPAPMMVGRL QFVSVGKENI ATELERIREL LPRYRYVAID TEYPGTIHGT PAGAALTPAA RYYALVKANV DEIPILQLGL TLCDEEGNLP
101: IVMDSDGGPL QLAWEFHFSD FDIARHPHSM ESTQGFNFAR ALMHGVPSTD FAARLAEVLA KVPQPLMWVA FGGAFDFAHM VKMLSGGQPL PETRGEFLAR
201: ARDLLHGMVF DAKYMAEHCG RAELCAGGLR TVASILGVPQ LIPVPPSLAG PKSHTACCIF NVMRLVIHGG TSYDGLIDGI Y

Best Arabidopsis Sequence Match ( AT3G44260.1 )
(BLAST)

001: MAIIKPNRDL KPDGVTVVTR EVWAENLESE FELISEIIDD YPFISMDTEF PGVIFKSDLR FTNPDDLYTL LKANVDALSL IQVGLTLSDV NGNLPDLGDD
101: LHRGFIWEFN FRDFDVARDA HAPDSIELLR RQGIDFERNC RDGVESERFA ELMMSSGLVC NEEVSWVTFH SAYDFGYLMK ILTRRELPGA LGEFKRVMRV
201: LFGERVYDVK HMMKFCERRL FGGLDRVART LEVNRAVGKC HQAGSDSLLT WHAFQRMRDL YFVQDGPEKH AGVLYGLEVF

Arabidopsis Description

CAF1-9Probable CCR4-associated factor 1 homolog 9 [Source:UniProtKB/Swiss-Prot;Acc:Q9LXM2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.