Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, plastid, nucleus
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 2
- golgi 1
- nucleus 1
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d002027_P002 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G44260.1 | Zm00001d002027_P002 | AT1G22920.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d048754_P001 | Maize | nucleus, plasma membrane, plastid | 100.0 | 100.0 |
| Zm00001d048757_P001 | Maize | nucleus, plasma membrane, plastid | 95.58 | 96.23 |
| Zm00001d048748_P001 | Maize | nucleus, plasma membrane, plastid | 95.24 | 95.56 |
| Zm00001d048746_P001 | Maize | nucleus, plasma membrane, plastid | 94.9 | 95.55 |
| Zm00001d007654_P001 | Maize | nucleus, plasma membrane, plastid | 69.39 | 70.83 |
| EES10179 | Sorghum | plasma membrane, plastid | 66.33 | 69.39 |
| OQU83918 | Sorghum | cytosol, extracellular, nucleus | 40.14 | 62.77 |
| OQU83919 | Sorghum | mitochondrion | 51.02 | 61.48 |
| Zm00001d007662_P001 | Maize | extracellular, nucleus, plastid | 22.11 | 50.0 |
| Zm00001d007664_P001 | Maize | extracellular, nucleus, plastid | 22.11 | 50.0 |
| Zm00001d007669_P001 | Maize | extracellular, nucleus, plastid | 22.11 | 50.0 |
| Zm00001d007666_P001 | Maize | extracellular, nucleus, plastid | 23.13 | 49.63 |
| Zm00001d002885_P001 | Maize | plastid | 48.98 | 45.14 |
| Os10t0123900-00 | Rice | extracellular, mitochondrion, nucleus | 39.12 | 41.82 |
| GSMUA_AchrUn_... | Banana | mitochondrion | 31.63 | 36.19 |
| GSMUA_Achr8P18010_001 | Banana | mitochondrion | 31.29 | 35.52 |
| Bra035002.1-P | Field mustard | nucleus | 31.97 | 34.69 |
| VIT_06s0080g01090.t01 | Wine grape | nucleus | 32.65 | 34.53 |
| CDY47299 | Canola | nucleus | 31.29 | 33.82 |
| Bra020179.1-P | Field mustard | nucleus | 30.61 | 33.33 |
| CDY08688 | Canola | cytosol | 30.95 | 32.62 |
| CDY35673 | Canola | nucleus | 29.93 | 32.59 |
| CDY09125 | Canola | nucleus | 29.93 | 32.59 |
| Bra002400.1-P | Field mustard | nucleus | 30.95 | 32.38 |
| CDX92371 | Canola | nucleus | 30.95 | 32.16 |
| KRH25294 | Soybean | nucleus | 30.27 | 32.01 |
| CDX98586 | Canola | nucleus | 30.61 | 31.8 |
| AT3G44260.1 | Thale cress | cytosol | 29.93 | 31.43 |
| AT5G22250.1 | Thale cress | cytosol | 29.59 | 31.3 |
| Zm00001d020486_P001 | Maize | extracellular | 29.59 | 31.18 |
| KRH30376 | Soybean | nucleus | 29.59 | 30.63 |
| CDX88806 | Canola | cytosol | 29.59 | 30.53 |
| Bra006616.1-P | Field mustard | cytosol | 29.25 | 30.18 |
| PGSC0003DMT400042215 | Potato | plastid | 28.91 | 29.82 |
| KRH26669 | Soybean | endoplasmic reticulum, golgi | 31.29 | 29.77 |
| Zm00001d001774_P001 | Maize | nucleus | 29.93 | 29.63 |
| Zm00001d052031_P001 | Maize | cytosol | 28.91 | 29.62 |
| Solyc01g007840.2.1 | Tomato | plastid | 28.57 | 29.47 |
| KRH22647 | Soybean | endoplasmic reticulum, vacuole | 30.95 | 29.17 |
| Zm00001d050433_P001 | Maize | nucleus | 27.55 | 28.93 |
| CDX70991 | Canola | cytosol, nucleus, plastid | 12.24 | 28.35 |
| Zm00001d026657_P001 | Maize | cytosol | 28.57 | 28.09 |
| Zm00001d029981_P001 | Maize | plastid | 31.97 | 25.34 |
| Zm00001d018378_P001 | Maize | nucleus | 6.8 | 25.32 |
| Zm00001d031508_P001 | Maize | cytosol | 31.29 | 23.35 |
| Zm00001d032158_P002 | Maize | plastid | 28.57 | 21.11 |
| Zm00001d007893_P001 | Maize | nucleus | 35.03 | 20.64 |
Protein Annotations
| EnsemblPlants:Zm00001d048752_P001 | EnsemblPlants:Zm00001d048752_T001 | EnsemblPlantsGene:Zm00001d048752 | EntrezGene:109939186 | Gene3D:3.30.420.10 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0005488 | InterPro:IPR036397 | InterPro:RNaseH-like_sf | InterPro:RNaseH_sf | InterPro:RNase_CAF1 |
| PANTHER:PTHR10797 | PANTHER:PTHR10797:SF9 | PFAM:PF04857 | ProteinID:AQK48831.1 | ProteinID:AQK48836.1 | SEG:seg |
| SUPFAM:SSF53098 | UniParc:UPI000221C0F0 | UniProt:K7U8Y1 | MapMan:35.1 | : | : |
Description
Putative CCR4-associated factor 1 homolog 3
Coordinates
chr4:+:4935434..4936318
Molecular Weight (calculated)
32026.6 Da
IEP (calculated)
5.572
GRAVY (calculated)
0.131
Length
294 amino acids
Sequence
(BLAST)
(BLAST)
001: MFPIPPPVIP APATVVGRFQ IVSVGASNYI EELNRIGFLL QMFPYVAIDT EYPGTLHGAP AGPALTTAAR YYAFVKANVD ELPALQLGLT LCDEGGKLPE
101: AIDDYGRSVQ LAWEFNFSDF DIARGRHAPE SVRFLMSQGF HFDVAREYGV PSAYFADWLA GVLARLPHWC QPPTWVAFGG AFDFAYMVKM LSGGQPLPDT
201: PEEFVALARY LLRGPVFDAK CMAQHCGRPE LCGAGLRTVA AVLGVPQLDP APPRLAGPKS HTACRIYTVM RTLVHGGDGY AYAYAYEGLI DGIY
101: AIDDYGRSVQ LAWEFNFSDF DIARGRHAPE SVRFLMSQGF HFDVAREYGV PSAYFADWLA GVLARLPHWC QPPTWVAFGG AFDFAYMVKM LSGGQPLPDT
201: PEEFVALARY LLRGPVFDAK CMAQHCGRPE LCGAGLRTVA AVLGVPQLDP APPRLAGPKS HTACRIYTVM RTLVHGGDGY AYAYAYEGLI DGIY
001: MKQISSGEVW RWNKEVEMNS IRDCLKHCSS IAIDTEFPGC LKETPMDASE EIRYRDMKFN VDNTHLIQLG FTLFDRRGFA KTWEINLSDF DEHKCFKNDK
101: SIAFLKSNGL NLDKIREEGI GIDEFFRDFS QILTEKDGKI TWVNFQGSYD NAYLVKGLTG GKPLPETKEE FHETVQQLLG KFVFDVKKIA ESCSGLSSQF
201: GLQRIADVLQ MKRVGKAHHA GSDSELTARV FTKLTFDLLN SRKQSVRRVD HQQFQLEQQQ HQQFMMTRCY IPIPMPIPRP RPVMFAAHHQ NPYFGGGYFR
301: MPVQGMNYVL
101: SIAFLKSNGL NLDKIREEGI GIDEFFRDFS QILTEKDGKI TWVNFQGSYD NAYLVKGLTG GKPLPETKEE FHETVQQLLG KFVFDVKKIA ESCSGLSSQF
201: GLQRIADVLQ MKRVGKAHHA GSDSELTARV FTKLTFDLLN SRKQSVRRVD HQQFQLEQQQ HQQFMMTRCY IPIPMPIPRP RPVMFAAHHQ NPYFGGGYFR
301: MPVQGMNYVL
Arabidopsis Description
CAF1-3Putative CCR4-associated factor 1 homolog 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SFX6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.