Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d002027_P002 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G44260.1 | Zm00001d002027_P002 | AT1G22920.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d026657_P001 | Maize | cytosol | 84.51 | 83.95 |
| EES11684 | Sorghum | nucleus | 86.53 | 76.72 |
| CDX70991 | Canola | cytosol, nucleus, plastid | 24.24 | 56.69 |
| GSMUA_Achr9P29700_001 | Banana | cytosol | 39.73 | 55.4 |
| Os04t0684900-02 | Rice | nucleus | 60.94 | 55.02 |
| GSMUA_Achr6P19450_001 | Banana | cytosol | 44.78 | 54.51 |
| HORVU2Hr1G123480.1 | Barley | nucleus | 58.25 | 53.23 |
| TraesCS2A01G583000.1 | Wheat | nucleus | 57.91 | 53.09 |
| TraesCS2D01G597200.1 | Wheat | nucleus | 58.25 | 52.91 |
| TraesCS2B01G603600.1 | Wheat | cytosol | 57.24 | 52.31 |
| Bra020179.1-P | Field mustard | nucleus | 46.8 | 51.48 |
| CDY09125 | Canola | nucleus | 45.79 | 50.37 |
| CDY35673 | Canola | nucleus | 45.45 | 50.0 |
| KRH25294 | Soybean | nucleus | 46.8 | 50.0 |
| GSMUA_Achr6P19460_001 | Banana | cytosol | 28.96 | 49.71 |
| VIT_06s0080g01090.t01 | Wine grape | nucleus | 45.79 | 48.92 |
| CDX92371 | Canola | nucleus | 46.46 | 48.76 |
| Bra002400.1-P | Field mustard | nucleus | 46.13 | 48.75 |
| Bra035002.1-P | Field mustard | nucleus | 44.44 | 48.71 |
| AT5G22250.1 | Thale cress | cytosol | 45.45 | 48.56 |
| CDY47299 | Canola | nucleus | 44.44 | 48.53 |
| CDX98586 | Canola | nucleus | 46.13 | 48.41 |
| KRH30376 | Soybean | nucleus | 45.79 | 47.89 |
| CDX88806 | Canola | cytosol | 45.45 | 47.37 |
| Bra006616.1-P | Field mustard | cytosol | 45.45 | 47.37 |
| Zm00001d020486_P001 | Maize | extracellular | 44.44 | 47.31 |
| AT3G44260.1 | Thale cress | cytosol | 44.11 | 46.79 |
| CDY08688 | Canola | cytosol | 43.77 | 46.59 |
| PGSC0003DMT400042215 | Potato | plastid | 43.1 | 44.91 |
| KRH26669 | Soybean | endoplasmic reticulum, golgi | 45.45 | 43.69 |
| Solyc01g007840.2.1 | Tomato | plastid | 41.08 | 42.81 |
| Zm00001d052031_P001 | Maize | cytosol | 40.4 | 41.81 |
| KRH22647 | Soybean | endoplasmic reticulum, vacuole | 42.76 | 40.71 |
| Zm00001d050433_P001 | Maize | nucleus | 36.03 | 38.21 |
| Zm00001d018378_P001 | Maize | nucleus | 9.43 | 35.44 |
| Zm00001d007662_P001 | Maize | extracellular, nucleus, plastid | 13.47 | 30.77 |
| Zm00001d007669_P001 | Maize | extracellular, nucleus, plastid | 13.47 | 30.77 |
| Zm00001d007664_P001 | Maize | extracellular, nucleus, plastid | 13.47 | 30.77 |
| Zm00001d048746_P001 | Maize | nucleus, plasma membrane, plastid | 29.63 | 30.14 |
| Zm00001d048748_P001 | Maize | nucleus, plasma membrane, plastid | 29.63 | 30.03 |
| Zm00001d048752_P001 | Maize | nucleus, plasma membrane, plastid | 29.63 | 29.93 |
| Zm00001d048754_P001 | Maize | nucleus, plasma membrane, plastid | 29.63 | 29.93 |
| Zm00001d007666_P001 | Maize | extracellular, nucleus, plastid | 13.8 | 29.93 |
| Zm00001d048757_P001 | Maize | nucleus, plasma membrane, plastid | 29.29 | 29.79 |
| Zm00001d002885_P001 | Maize | plastid | 31.65 | 29.47 |
| Zm00001d007654_P001 | Maize | nucleus, plasma membrane, plastid | 27.27 | 28.12 |
| Zm00001d032158_P002 | Maize | plastid | 37.04 | 27.64 |
| Zm00001d029981_P001 | Maize | plastid | 29.63 | 23.72 |
| Zm00001d031508_P001 | Maize | cytosol | 31.31 | 23.6 |
| Zm00001d007893_P001 | Maize | nucleus | 32.66 | 19.44 |
Protein Annotations
| EMBL:BT065417 | EnsemblPlants:Zm00001d001774_P001 | EnsemblPlants:Zm00001d001774_T001 | EnsemblPlantsGene:Zm00001d001774 | Gene3D:3.30.420.10 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0005488 | InterPro:IPR036397 | InterPro:RNaseH-like_sf | InterPro:RNaseH_sf | InterPro:RNase_CAF1 |
| PANTHER:PTHR10797 | PANTHER:PTHR10797:SF3 | PFAM:PF04857 | ProteinID:ONM11926.1 | SEG:seg | SUPFAM:SSF53098 |
| UniParc:UPI000194B2FF | UniProt:C0PAU8 | MapMan:35.1 | : | : | : |
Description
Probable CCR4-associated factor 1 homolog 11
Coordinates
chr2:-:481355..482248
Molecular Weight (calculated)
32578.4 Da
IEP (calculated)
9.997
GRAVY (calculated)
-0.015
Length
297 amino acids
Sequence
(BLAST)
(BLAST)
001: MPSVEVEVQV GGAGGWRPKQ QQKHRHHHHP LEIRQVWADN VDREFKLIRA AIERFPYVSM DTEFPGVIHH PPPAVHHSTL TAPQRYALLK SNVDALHLIQ
101: VGLALAPSPG SPPALAFQIN LRGFDPRVHR HAPDSVRLLA ASGLDLAAHR ARGVPARAFA ALLASSGLIC NPAVAWVTFS SAYDFAYLVK LLMGRKLPRA
201: LPDFLRYVRV YFGAAVYDVK HMARVACASH GEVALLGGLE RVAAALRVRR AAGQGHQAAS DSVLTWDTFR EMARIYFPKE GSLEPCAGVL YGLELPN
101: VGLALAPSPG SPPALAFQIN LRGFDPRVHR HAPDSVRLLA ASGLDLAAHR ARGVPARAFA ALLASSGLIC NPAVAWVTFS SAYDFAYLVK LLMGRKLPRA
201: LPDFLRYVRV YFGAAVYDVK HMARVACASH GEVALLGGLE RVAAALRVRR AAGQGHQAAS DSVLTWDTFR EMARIYFPKE GSLEPCAGVL YGLELPN
001: MSLFLKDDSI QIREVWNDNL QEEMDLIRDV VDDFPYVAMD TEFPGIVVRP VGTFKSNADY HYETLKTNVN ILKMIQLGLT FSNEQGNLPT CGTDKYCIWQ
101: FNFREFDLDS DIFALDSIEL LKQSGIDLAK NTLDGIDSKR FAELLMSSGI VLNENVHWVT FHSGYDFGYL LKLLTCQNLP DSQTDFFKLI NVYFPTVYDI
201: KHLMKFCNSL HGGLNKLAEL LEVERVGICH QAGSDSLLTS CTFRKLKENF FVGPLHKYSG VLYGLGVENG QVAI
101: FNFREFDLDS DIFALDSIEL LKQSGIDLAK NTLDGIDSKR FAELLMSSGI VLNENVHWVT FHSGYDFGYL LKLLTCQNLP DSQTDFFKLI NVYFPTVYDI
201: KHLMKFCNSL HGGLNKLAEL LEVERVGICH QAGSDSLLTS CTFRKLKENF FVGPLHKYSG VLYGLGVENG QVAI
Arabidopsis Description
Polynucleotidyl transferase, ribonuclease H-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4HU15]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.