Factsheet for HORVU2Hr1G123480.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU0Hr1G018470.1
HORVU0Hr1G025410.1
HORVU1Hr1G008160.1
HORVU2Hr1G056160.5
HORVU2Hr1G067660.1
HORVU2Hr1G112000.1
HORVU3Hr1G021300.1
HORVU3Hr1G054660.1
HORVU3Hr1G113750.1
HORVU4Hr1G047410.2
HORVU4Hr1G048730.1
HORVU6Hr1G023630.1
HORVU7Hr1G078010.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G44260.1	HORVU0Hr1G018470.1	AT1G22920.1	21798944
AT3G44260.1	HORVU0Hr1G025410.1	AT1G22920.1	21798944
AT3G44260.1	HORVU1Hr1G008160.1	AT1G22920.1	21798944
AT3G44260.1	HORVU2Hr1G056160.5	AT1G22920.1	21798944
AT3G44260.1	HORVU2Hr1G067660.1	AT1G22920.1	21798944
AT3G44260.1	HORVU2Hr1G112000.1	AT1G22920.1	21798944
AT3G44260.1	HORVU3Hr1G021300.1	AT1G22920.1	21798944
AT3G44260.1	HORVU3Hr1G054660.1	AT1G22920.1	21798944
AT3G44260.1	HORVU3Hr1G113750.1	AT1G22920.1	21798944
AT3G44260.1	HORVU4Hr1G047410.2	AT1G22920.1	21798944
AT3G44260.1	HORVU4Hr1G048730.1	AT1G22920.1	21798944
AT3G44260.1	HORVU6Hr1G023630.1	AT1G22920.1	21798944
AT3G44260.1	HORVU7Hr1G078010.1	AT1G22920.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G597200.1	Wheat	nucleus	84.31	83.79
TraesCS2B01G603600.1	Wheat	cytosol	83.38	83.38
TraesCS2A01G583000.1	Wheat	nucleus	83.08	83.33
Zm00001d026657_P001	Maize	cytosol	55.08	59.87
CDX70991	Canola	cytosol, nucleus, plastid	22.77	58.27
Zm00001d001774_P001	Maize	nucleus	53.23	58.25
Os04t0684900-02	Rice	nucleus	55.38	54.71
GSMUA_Achr9P29700_001	Banana	cytosol	34.77	53.05
EES11684	Sorghum	nucleus	53.85	52.24
GSMUA_Achr6P19450_001	Banana	cytosol	38.77	51.64
GSMUA_Achr6P19460_001	Banana	cytosol	27.08	50.87
Bra020179.1-P	Field mustard	nucleus	40.92	49.26
AT5G22250.1	Thale cress	cytosol	41.85	48.92
CDY09125	Canola	nucleus	40.62	48.89
CDY35673	Canola	nucleus	40.31	48.52
VIT_06s0080g01090.t01	Wine grape	nucleus	41.23	48.2
KRH25294	Soybean	nucleus	40.92	47.84
Bra002400.1-P	Field mustard	nucleus	41.23	47.69
CDX92371	Canola	nucleus	41.23	47.35
CDY47299	Canola	nucleus	39.38	47.06
CDX98586	Canola	nucleus	40.92	47.0
Bra035002.1-P	Field mustard	nucleus	39.08	46.86
KRH30376	Soybean	nucleus	40.31	46.13
AT3G44260.1	Thale cress	cytosol	39.69	46.07
CDX88806	Canola	cytosol	40.0	45.61
CDY08688	Canola	cytosol	39.08	45.52
Bra006616.1-P	Field mustard	cytosol	39.69	45.26
PGSC0003DMT400042215	Potato	plastid	39.38	44.91
Solyc01g007840.2.1	Tomato	plastid	38.15	43.51
KRH26669	Soybean	endoplasmic reticulum, golgi	40.92	43.04
KRH22647	Soybean	endoplasmic reticulum, vacuole	40.0	41.67
HORVU6Hr1G085410.1	Barley	cytosol	36.92	41.52
HORVU7Hr1G067520.3	Barley	nucleus	37.23	40.33

Protein Annotations

EMBL:AK366521	EnsemblPlants:HORVU2Hr1G123480.1	EnsemblPlantsGene:HORVU2Hr1G123480	Gene3D:3.30.420.10	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	InterPro:IPR036397	InterPro:RNaseH-like_sf	InterPro:RNaseH_sf	InterPro:RNase_CAF1	PANTHER:PTHR10797
PANTHER:PTHR10797:SF3	PFAM:PF04857	SEG:seg	SUPFAM:SSF53098	TMHMM:TMhelix	UniParc:UPI0002007446
UniProt:F2DRK3	MapMan:35.1	:	:	:	:

Description

Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2DRK3]

Coordinates

chrchr2H:+:755770378..755771998

Molecular Weight (calculated)

34695.4 Da

IEP (calculated)

8.882

GRAVY (calculated)

-0.054

Length

325 amino acids

Sequence
(BLAST)

001: MKVQTEAAAG AGGEGKLVIR QVWAHNVESE FHAIRQAAER FPYVSMDTEF PGVIHCPSKH HASLTPSERY EALKANVDAL HLIQVGLAFA ASPDAPPSVA
101: FEINLREFDP RVHRHNPRSV ALLADHGLDF ALQRRHGVDA RVFSALLMSS GLVCSGAAAW VTFHSAYDFG YLVKLLMGRK LPRTLPEFIG LVRVFFGQQV
201: YDARHVMDSC AGLYGGLDAL AAQLGVERAA GMSHQAGSDA ALTWDVFRRI REVYFANRQG LGAFAGVLYG LELDLALAPA DNGGGKKCGA ANANGNAVTA
301: NGTGTGTGKG RGGSNNNRRA VAAMR

Best Arabidopsis Sequence Match ( AT1G80780.1 )
(BLAST)

001: MSLFLKDDSI QIREVWNDNL QEEMDLIRDV VDDFPYVAMD TEFPGIVVRP VGTFKSNADY HYETLKTNVN ILKMIQLGLT FSNEQGNLPT CGTDKYCIWQ
101: FNFREFDLDS DIFALDSIEL LKQSGIDLAK NTLDGIDSKR FAELLMSSGI VLNENVHWVT FHSGYDFGYL LKLLTCQNLP DSQTDFFKLI NVYFPTVYDI
201: KHLMKFCNSL HGGLNKLAEL LEVERVGICH QAGSDSLLTS CTFRKLKENF FVGPLHKYSG VLYGLGVENG QVAI

Arabidopsis Description

Polynucleotidyl transferase, ribonuclease H-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4HU15]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.