Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU1Hr1G008160.1 | Barley | cytosol | 55.42 | 87.5 |
| HORVU3Hr1G054660.1 | Barley | cytosol | 88.33 | 86.89 |
| HORVU0Hr1G018470.1 | Barley | cytosol | 86.25 | 85.19 |
| HORVU7Hr1G078010.1 | Barley | cytosol | 47.92 | 84.56 |
| HORVU3Hr1G113750.1 | Barley | cytosol | 52.92 | 81.94 |
| HORVU2Hr1G056160.5 | Barley | cytosol | 52.5 | 75.0 |
| HORVU0Hr1G025410.1 | Barley | cytosol | 82.92 | 66.11 |
| HORVU4Hr1G048730.1 | Barley | cytosol | 82.92 | 65.89 |
| TraesCS2A01G504600.1 | Wheat | cytosol | 90.0 | 59.34 |
| TraesCS2D01G505300.1 | Wheat | golgi, unclear | 89.58 | 59.07 |
| Zm00001d002027_P002 | Maize | extracellular | 87.08 | 57.73 |
| KXG27287 | Sorghum | cytosol | 87.5 | 56.3 |
| HORVU2Hr1G112000.1 | Barley | cytosol | 90.42 | 54.52 |
| Bra024548.1-P | Field mustard | cytosol | 80.83 | 54.49 |
| AT1G71230.1 | Thale cress | cytosol | 80.83 | 54.19 |
| GSMUA_Achr10P... | Banana | cytosol | 82.08 | 53.53 |
| KRH61926 | Soybean | nucleus | 82.08 | 52.67 |
| AT1G22920.1 | Thale cress | cytosol | 78.33 | 52.66 |
| PGSC0003DMT400023896 | Potato | cytosol | 80.42 | 52.59 |
| Solyc11g017300.1.1 | Tomato | cytosol | 80.42 | 52.59 |
| PGSC0003DMT400069203 | Potato | cytosol | 80.0 | 52.32 |
| Solyc06g073150.2.1 | Tomato | cytosol | 79.58 | 52.04 |
| Bra012351.1-P | Field mustard | cytosol | 77.08 | 51.97 |
| HORVU3Hr1G021300.1 | Barley | cytosol, plastid | 35.42 | 51.52 |
| KRH52586 | Soybean | cytosol, nucleus | 81.67 | 47.92 |
| VIT_16s0100g00150.t01 | Wine grape | cytosol, extracellular, plastid | 12.5 | 44.78 |
| CDY12502 | Canola | cytosol | 63.75 | 43.34 |
| HORVU1Hr1G017260.3 | Barley | cytosol | 17.5 | 37.17 |
| HORVU4Hr1G047410.2 | Barley | cytosol, mitochondrion, peroxisome | 39.17 | 37.15 |
| HORVU2Hr1G067660.1 | Barley | cytosol, peroxisome | 7.92 | 27.14 |
| HORVU6Hr1G058050.2 | Barley | cytosol | 18.75 | 26.01 |
| HORVU1Hr1G058180.1 | Barley | plastid | 32.08 | 21.94 |
| HORVU3Hr1G037790.1 | Barley | nucleus, plastid | 32.08 | 21.27 |
| HORVU7Hr1G096410.6 | Barley | cytosol, plastid | 28.75 | 20.72 |
Protein Annotations
| EnsemblPlants:HORVU6Hr1G023630.1 | EnsemblPlantsGene:HORVU6Hr1G023630 | Gene3D:3.40.140.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR037518 | InterPro:JAMM/MPN+_dom | InterPro:MPN | PANTHER:PTHR10410 | PANTHER:PTHR10410:SF14 | PFAM:PF01398 |
| PFscan:PS50249 | SEG:seg | SMART:SM00232 | SUPFAM:SSF102712 | UniParc:UPI000B461E91 | UniProt:A0A287TLG0 |
| MapMan:19.2.3.3.1.5 | : | : | : | : | : |
Description
No Description!
Coordinates
chrchr6H:+:79609945..79612468
Molecular Weight (calculated)
26968.1 Da
IEP (calculated)
5.316
GRAVY (calculated)
-0.235
Length
240 amino acids
Sequence
(BLAST)
(BLAST)
001: MATSGGAHEL LKMVVHARAS GTIKIMGLIE GDSIIVMDAF ALPFEGTETR VKAQADAYEY MVEYSTINKQ AGRLETVVGW YHSHPGYGCW LSGIDVSTQM
101: LNQQFQEPFL AVVIDPTRTV FAGKVDTGAF RTYPKDYKPP DETVSEYQAI PLKKIEDFGV HCKQYYSLDI TYFKSSLDSH LLDLLWNKYW VNTLSSSPLL
201: GNRDYVAGEI FDLADTLEQA EGQLAHSRFG MLMPSQRKKE
101: LNQQFQEPFL AVVIDPTRTV FAGKVDTGAF RTYPKDYKPP DETVSEYQAI PLKKIEDFGV HCKQYYSLDI TYFKSSLDSH LLDLLWNKYW VNTLSSSPLL
201: GNRDYVAGEI FDLADTLEQA EGQLAHSRFG MLMPSQRKKE
001: MEGSSSAIAR KTWELENNIL PVEPTDSASD SIFHYDDASQ AKIQQEKPWA SDPNYFKRVH ISALALLKMV VHARSGGTIE IMGLMQGKTE GDTIIVMDAF
101: ALPVEGTETR VNAQSDAYEY MVEYSQTSKL AGRLENVVGW YHSHPGYGCW LSGIDVSTQM LNQQYQEPFL AVVIDPTRTV SAGKVEIGAF RTYPEGHKIS
201: DDHVSEYQTI PLNKIEDFGV HCKQYYSLDI TYFKSSLDSH LLDLLWNKYW VNTLSSSPLL GNGDYVAGQI SDLAEKLEQA ESQLANSRYG GIAPAGHQRR
301: KEDEPQLAKI TRDSAKITVE QVHGLMSQVI KDILFNSARQ SKKSADDSSD PEPMITS
101: ALPVEGTETR VNAQSDAYEY MVEYSQTSKL AGRLENVVGW YHSHPGYGCW LSGIDVSTQM LNQQYQEPFL AVVIDPTRTV SAGKVEIGAF RTYPEGHKIS
201: DDHVSEYQTI PLNKIEDFGV HCKQYYSLDI TYFKSSLDSH LLDLLWNKYW VNTLSSSPLL GNGDYVAGQI SDLAEKLEQA ESQLANSRYG GIAPAGHQRR
301: KEDEPQLAKI TRDSAKITVE QVHGLMSQVI KDILFNSARQ SKKSADDSSD PEPMITS
Arabidopsis Description
CSN5ACOP9 signalosome complex subunit 5a [Source:UniProtKB/Swiss-Prot;Acc:Q8LAZ7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.