Factsheet for HORVU4Hr1G053850.2

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, cytosol

Predictor Summary:

cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plasma membrane
Any Predictor:	cytosol
MultiLoc:	cytosol
YLoc:	cytosol

plasma membrane: 29385242

msms PMID: 29385242 doi

K Witzel, A Matros, ALB Møller, E Ramireddy, C Finnie, M Peukert, T Rutten, A Herzog, G Kunze, M Melzer, S Kaspar-Schoenefeld, T Schmülling, B Svensson, HP Mock

Biosystems Engineering, Fraunhofer Institute for Factory Operation and Automation, Joseph-von-Fraunhofer-Straße 1, 39106, Magdeburg, Germany., Institute of Biology/Applied Genetics, Dahlem Centre of Plant Sciences, Free University of Berlin, Albrecht-Thaer-Weg 6, 14195, Berlin, Germany., Leibniz Institute of Plant Genetics and Crop Plant Research, Corrensstraße 3, 06466, Stadt Seeland, Gatersleben, Germany., Leibniz Institute of Vegetable and Ornamental Crops, Theodor-Echtermeyer-Weg 1, 14979, Großbeeren, Germany., Technical University of Denmark, Søltofts Plads, Building 224, 2800, Kongens Lyngby, Denmark.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU4Hr1G053790.1	Barley	cytosol	93.73	99.7
TraesCS4B01G183900.1	Wheat	cytosol	88.89	94.55
HORVU4Hr1G053770.1	Barley	cytosol	83.48	88.79
HORVU4Hr1G089750.2	Barley	cytosol	49.86	87.06
HORVU6Hr1G090040.1	Barley	cytosol	87.18	85.24
TraesCS4D01G184900.1	Wheat	plastid	89.46	81.77
HORVU6Hr1G032290.1	Barley	cytosol	56.98	74.91
Zm00001d047658_P001	Maize	cytosol	68.38	73.39
Zm00001d047651_P001	Maize	cytosol, endoplasmic reticulum, extracellular	68.38	73.39
Os03t0307200-01	Rice	endoplasmic reticulum	66.67	71.78
Zm00001d047656_P001	Maize	cytosol	66.67	71.56
HORVU4Hr1G089870.1	Barley	cytosol	38.18	63.81
HORVU2Hr1G015980.1	Barley	cytosol	59.26	61.18
HORVU2Hr1G004960.1	Barley	mitochondrion	57.27	50.12
HORVU6Hr1G090180.2	Barley	nucleus	85.75	49.34
GSMUA_Achr2P00420_001	Banana	cytosol	43.3	48.1
GSMUA_Achr5P21100_001	Banana	cytosol	43.02	47.94
HORVU0Hr1G017720.1	Barley	cytosol, plastid	34.19	44.94
HORVU3Hr1G010650.1	Barley	plastid	31.91	43.92
Bra018573.1-P	Field mustard	cytosol	39.32	42.72
CDX94991	Canola	cytosol	39.32	42.72
Solyc01g100490.2.1	Tomato	cytosol	38.46	42.59
AT1G09240.1	Thale cress	cytosol	38.75	42.5
CDX98807	Canola	cytosol	35.9	42.42
CDX93517	Canola	cytosol	39.03	42.41
PGSC0003DMT400007275	Potato	cytosol	38.18	42.27
CDY06526	Canola	cytosol	38.46	42.19
Bra035602.1-P	Field mustard	cytosol	38.18	41.88
CDY64985	Canola	cytosol	38.18	41.88
AT5G04950.1	Thale cress	cytosol	38.18	41.88
AT5G56080.1	Thale cress	cytosol	37.89	41.56
Bra002851.1-P	Field mustard	cytosol	37.61	41.25
CDY28616	Canola	cytosol	37.61	41.25
CDY17383	Canola	cytosol	37.61	41.25
KXG39528	Sorghum	cytosol	70.94	41.23
Bra038164.1-P	Field mustard	cytosol	37.89	41.18
CDX94325	Canola	cytosol	32.48	41.01
CDY42364	Canola	cytosol	37.61	40.99
CDY39002	Canola	cytosol	37.32	40.68
CDY11321	Canola	cytosol	37.04	40.62
Bra005831.1-P	Field mustard	cytosol	37.04	40.62
AT1G56430.1	Thale cress	cytosol	37.32	40.43
Bra009407.1-P	Field mustard	cytosol	35.33	40.39
CDX80931	Canola	cytosol	36.75	40.31
VIT_14s0060g01190.t01	Wine grape	cytosol	36.75	39.94
Zm00001d028887_P001	Maize	cytosol	68.38	39.93
CDY69948	Canola	cytosol	31.62	39.93
Zm00001d028888_P001	Maize	cytosol, extracellular	67.81	39.6
KRG96720	Soybean	cytosol	35.33	39.37
KRH68436	Soybean	cytosol	35.9	39.25
CDX70180	Canola	cytosol	36.18	39.08
KRH36982	Soybean	cytosol	34.19	38.84
AT4G26483.1	Thale cress	cytosol, extracellular, plastid	9.12	38.1
CDY46596	Canola	cytosol	21.65	36.54
KRH43850	Soybean	cytosol	29.06	35.66
VIT_11s0052g01150.t01	Wine grape	plastid	28.49	35.21
KRH13614	Soybean	cytosol	28.21	34.62
Bra004521.1-P	Field mustard	cytosol	15.38	29.19
GSMUA_Achr11P...	Banana	cytosol	42.45	25.21
CDY01124	Canola	cytosol	8.83	24.6
Zm00001d047639_P004	Maize	extracellular	69.23	24.57
CDY09316	Canola	cytosol	6.27	21.36

Protein Annotations

EnsemblPlants:HORVU4Hr1G053850.2	EnsemblPlantsGene:HORVU4Hr1G053850	Gene3D:3.40.50.150	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016740	GO:GO:0030410	GO:GO:0030418
InterPro:IPR004298	InterPro:Nicotian_synth	InterPro:SAM-dependent_MTases	PANTHER:PTHR32266	PANTHER:PTHR32266:SF10	PFAM:PF03059
PFscan:PS51142	SUPFAM:SSF53335	UniParc:UPI000B46995E	UniProt:A0A287P336	MapMan:25.4.3.1.1	:

Description

No Description!

Coordinates

chrchr4H:-:448594604..448596621

Molecular Weight (calculated)

37723.0 Da

IEP (calculated)

5.508

GRAVY (calculated)

0.005

Length

351 amino acids

Sequence
(BLAST)

001: QLHPPLHFAP VPQVATTYSI KMDAQNKEVD ALVQKITGLH AAIAKLPSLS PSPDVDALFT DLVTACVPPS PVDVTKLGSE AQEMREGLIR LCSEAEGKLE
101: AHYSDMLAAF DNPLDHLGMF PYYSNYINLS KLEYELLARY VPGGIAPARV AFIGSGPLPF SSYVLAARHL PDAMFDNYDL CSAANDRASK LFRADKDVGA
201: RMSFHTADVA DLTGELAAYD VVFLAALVGM AAEDKTKVIA HLGAHMADGA ALVVRSAHGA RGFLYPIVDP QDIGRGGFEV LAVCHPDDDV VNSVIIAHKS
301: KDVHANERPN GRGGQYARGA VPVVSPPCRF GEMVADVTHK REEFTNAEVA F

Best Arabidopsis Sequence Match ( AT1G09240.1 )
(BLAST)

001: MGCQDEQLVQ TICDLYEKIS KLESLKPSED VNILFKQLVS TCIPPNPNID VTKMCDRVQE IRLNLIKICG LAEGHLENHF SSILTSYQDN PLHHLNIFPY
101: YNNYLKLGKL EFDLLEQNLN GFVPKSVAFI GSGPLPLTSI VLASFHLKDT IFHNFDIDPS ANSLASLLVS SDPDISQRMF FHTVDIMDVT ESLKSFDVVF
201: LAALVGMNKE EKVKVIEHLQ KHMAPGAVLM LRSAHGPRAF LYPIVEPCDL QGFEVLSIYH PTDDVINSVV ISKKHPVVSI GNVGGPNSCL LKPCNCSKTH
301: AKMNKNMMIE EFGAREEQLS

Arabidopsis Description

NAS3Nicotianamine synthase 3 [Source:UniProtKB/Swiss-Prot;Acc:O80483]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.