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Barley
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Barley
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 2
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:nucleus
MultiLoc:nucleus
YLoc:nucleus
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS6A01G386200.1 Wheat cytosol 50.98 94.24
TraesCS6B01G425200.1 Wheat cytosol, peroxisome, plastid 50.33 93.03
TraesCS6D01G370800.1 Wheat cytosol 50.0 92.42
HORVU6Hr1G090040.1 Barley cytosol 54.1 91.92
HORVU4Hr1G053790.1 Barley cytosol 49.51 91.52
HORVU4Hr1G089750.2 Barley cytosol 29.02 88.06
HORVU4Hr1G053850.2 Barley cytosol, plasma membrane 49.34 85.75
HORVU4Hr1G053770.1 Barley cytosol 45.41 83.94
HORVU6Hr1G032290.1 Barley cytosol 32.62 74.53
Zm00001d047658_P001 Maize cytosol 39.67 74.01
Zm00001d047651_P001 Maize cytosol, endoplasmic reticulum, extracellular 39.67 74.01
Os03t0307200-01 Rice endoplasmic reticulum 38.69 72.39
Zm00001d047656_P001 Maize cytosol 38.69 72.17
HORVU4Hr1G089870.1 Barley cytosol 21.48 62.38
HORVU2Hr1G015980.1 Barley cytosol 34.26 61.47
HORVU2Hr1G004960.1 Barley mitochondrion 33.28 50.62
GSMUA_Achr2P00420_001 Banana cytosol 24.92 48.1
GSMUA_Achr5P21100_001 Banana cytosol 24.59 47.62
HORVU3Hr1G010650.1 Barley plastid 18.52 44.31
HORVU0Hr1G017720.1 Barley cytosol, plastid 19.34 44.19
Solyc01g100490.2.1 Tomato cytosol 22.62 43.53
PGSC0003DMT400007275 Potato cytosol 22.3 42.9
AT1G09240.1 Thale cress cytosol 22.3 42.5
CDX98807 Canola cytosol 20.66 42.42
Bra018573.1-P Field mustard cytosol 22.46 42.41
KXG39528 Sorghum cytosol 41.97 42.38
CDX93517 Canola cytosol 22.3 42.11
CDX94991 Canola cytosol 22.3 42.11
CDY06526 Canola cytosol 21.8 41.56
AT5G56080.1 Thale cress cytosol 21.8 41.56
Bra035602.1-P Field mustard cytosol 21.8 41.56
CDY64985 Canola cytosol 21.8 41.56
Zm00001d028887_P001 Maize cytosol 40.82 41.43
Bra009407.1-P Field mustard cytosol 20.66 41.04
KRG96720 Soybean cytosol 21.15 40.95
AT5G04950.1 Thale cress cytosol 21.48 40.94
Bra038164.1-P Field mustard cytosol 21.64 40.87
CDY42364 Canola cytosol 21.48 40.68
CDX94325 Canola cytosol 18.52 40.65
CDY17383 Canola cytosol 21.31 40.62
Bra002851.1-P Field mustard cytosol 21.31 40.62
CDY28616 Canola cytosol 21.31 40.62
Zm00001d028888_P001 Maize cytosol, extracellular 40.0 40.6
CDY39002 Canola cytosol 21.31 40.37
CDY11321 Canola cytosol 21.15 40.31
Bra005831.1-P Field mustard cytosol 21.15 40.31
AT1G56430.1 Thale cress cytosol 21.31 40.12
VIT_14s0060g01190.t01 Wine grape cytosol 21.15 39.94
CDY69948 Canola cytosol 18.2 39.93
KRH68436 Soybean cytosol 20.98 39.88
KRH36982 Soybean cytosol 20.16 39.81
CDX80931 Canola cytosol 20.82 39.69
CDX70180 Canola cytosol 20.49 38.46
AT4G26483.1 Thale cress cytosol, extracellular, plastid 5.08 36.9
VIT_11s0052g01150.t01 Wine grape plastid 16.89 36.27
CDY46596 Canola cytosol 12.13 35.58
KRH43850 Soybean cytosol 16.23 34.62
KRH13614 Soybean cytosol 16.07 34.27
Bra004521.1-P Field mustard cytosol 8.85 29.19
Zm00001d047639_P004 Maize extracellular 42.62 26.29
GSMUA_Achr11P... Banana cytosol 25.41 26.23
CDY01124 Canola cytosol 4.92 23.81
CDY09316 Canola cytosol 3.44 20.39
Protein Annotations
EnsemblPlants:HORVU6Hr1G090180.2EnsemblPlantsGene:HORVU6Hr1G090180Gene3D:3.40.50.150GO:GO:0003674GO:GO:0003824GO:GO:0008150
GO:GO:0008152GO:GO:0009058GO:GO:0009987GO:GO:0016740GO:GO:0030410GO:GO:0030418
InterPro:IPR004298InterPro:Nicotian_synthInterPro:SAM-dependent_MTasesPANTHER:PTHR32266PANTHER:PTHR32266:SF10PFAM:PF03059
PFscan:PS51142SEG:segSUPFAM:SSF53335MapMan:25.4.3.1.1::
Description
No Description!
Coordinates
chrchr6H:+:571731286..571815508
Molecular Weight (calculated)
67675.5 Da
IEP (calculated)
12.113
GRAVY (calculated)
-0.670
Length
610 amino acids
Sequence
(BLAST)
001: GRPEQGGRRP CPEDHRPPRR HRQAALAQPV PGRRRALHRP GHRVRAPEPR GRDQARPGGA GDAGGPHPPL LRGRGQAGGA LLRHARRLRQ PARPPRRLPL
101: LQQLHQPQQA RVRAPRALRA RRHRPGPRRL HRLRPAAVQL LRPRRAPPAR HRVRQLRPVR RGQRPREQAV PRGQGRRRPH VVPHRRRRGP HRRARYVRRR
201: LPGRARWHGR RGQGQGDRAP WRAHGGRGGP RRAQRARGAW VPLSDRRSPG HWSRRVRGAR RVSPRRRRGE LRHHRLQAMS AHASKEVDAL VQKITGLHAA
301: IAKLPSLSPS PDVDALFTDL VTACAPPSPV DVTKLAPEAQ AMREGLIRLC SEAEGKLEAH YSDMLAAFDN PLDHLGVFPY YSNYINLSKL EYELLARYVP
401: GGIAPARVAF IGSGPLPFSS YVLAARHLPD TVFDNYDLCG AANDRASRLF RADKDVGARM SFHTADVADL TDELATYDVV FLAALVGMAA EDKAKVIAHL
501: GAHMADGAAL VVRSAHGARG FLYPIVDPQD IGRGGFEVLA VCHPDDDVVN SVIIAQKSND VHEYGLGSGR GGRYARGTVV PVVSPPCRFG EMVADVTQKR
601: EEFAKAEVAF
Best Arabidopsis Sequence Match ( AT1G09240.1 )
(BLAST)
001: MGCQDEQLVQ TICDLYEKIS KLESLKPSED VNILFKQLVS TCIPPNPNID VTKMCDRVQE IRLNLIKICG LAEGHLENHF SSILTSYQDN PLHHLNIFPY
101: YNNYLKLGKL EFDLLEQNLN GFVPKSVAFI GSGPLPLTSI VLASFHLKDT IFHNFDIDPS ANSLASLLVS SDPDISQRMF FHTVDIMDVT ESLKSFDVVF
201: LAALVGMNKE EKVKVIEHLQ KHMAPGAVLM LRSAHGPRAF LYPIVEPCDL QGFEVLSIYH PTDDVINSVV ISKKHPVVSI GNVGGPNSCL LKPCNCSKTH
301: AKMNKNMMIE EFGAREEQLS
Arabidopsis Description
NAS3Nicotianamine synthase 3 [Source:UniProtKB/Swiss-Prot;Acc:O80483]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.