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Barley
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Barley
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 2
  • plastid 2
  • cytosol 2
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:nucleus
EpiLoc:plastid
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:plastid
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS6A01G163100.1 Wheat cytosol 94.76 77.61
TraesCS6D01G148000.1 Wheat cytosol 95.51 77.51
TraesCS6B01G187400.1 Wheat cytosol 95.51 77.51
TraesCS6A01G165100.1 Wheat cytosol 95.51 77.51
TraesCS6D01G148200.1 Wheat cytosol 95.13 77.2
TraesCS6B01G186100.1 Wheat cytosol 94.38 76.6
TraesCS6D01G148600.1 Wheat cytosol 92.88 75.38
TraesCS6A01G163200.1 Wheat cytosol 88.39 74.68
HORVU4Hr1G089750.2 Barley cytosol 51.69 68.66
HORVU4Hr1G053790.1 Barley cytosol 75.28 60.91
Os03t0307200-01 Rice endoplasmic reticulum 74.16 60.74
Zm00001d047658_P001 Maize cytosol 73.03 59.63
Zm00001d047651_P001 Maize cytosol, endoplasmic reticulum, extracellular 73.03 59.63
Zm00001d047656_P001 Maize cytosol 71.16 58.1
HORVU4Hr1G053850.2 Barley cytosol, plasma membrane 74.91 56.98
HORVU4Hr1G053770.1 Barley cytosol 69.66 56.36
HORVU6Hr1G090040.1 Barley cytosol 74.53 55.43
HORVU2Hr1G015980.1 Barley cytosol 64.79 50.88
GSMUA_Achr2P00420_001 Banana cytosol 52.06 43.99
GSMUA_Achr5P21100_001 Banana cytosol 51.31 43.49
HORVU3Hr1G010650.1 Barley plastid 39.7 41.57
KRH36982 Soybean cytosol 45.69 39.48
PGSC0003DMT400007275 Potato cytosol 46.07 38.8
Solyc01g100490.2.1 Tomato cytosol 46.07 38.8
KRG96720 Soybean cytosol 44.94 38.1
AT4G26483.1 Thale cress cytosol, extracellular, plastid 11.98 38.1
VIT_14s0060g01190.t01 Wine grape cytosol 45.69 37.77
HORVU2Hr1G004960.1 Barley mitochondrion 56.55 37.66
CDX93517 Canola cytosol 45.32 37.46
HORVU0Hr1G017720.1 Barley cytosol, plastid 37.45 37.45
CDX94325 Canola cytosol 38.95 37.41
AT1G09240.1 Thale cress cytosol 44.57 37.19
KRH68436 Soybean cytosol 44.57 37.07
CDY46596 Canola cytosol 28.84 37.02
AT5G04950.1 Thale cress cytosol 44.19 36.88
Bra018573.1-P Field mustard cytosol 44.57 36.84
CDX94991 Canola cytosol 44.57 36.84
CDX98807 Canola cytosol 40.82 36.7
CDY69948 Canola cytosol 38.2 36.69
CDY39002 Canola cytosol 44.19 36.65
CDY42364 Canola cytosol 44.19 36.65
Bra035602.1-P Field mustard cytosol 43.82 36.56
CDY06526 Canola cytosol 43.82 36.56
CDY64985 Canola cytosol 43.82 36.56
CDY11321 Canola cytosol 43.45 36.25
Bra005831.1-P Field mustard cytosol 43.45 36.25
Bra038164.1-P Field mustard cytosol 43.82 36.22
AT5G56080.1 Thale cress cytosol 43.07 35.94
Bra002851.1-P Field mustard cytosol 43.07 35.94
VIT_11s0052g01150.t01 Wine grape plastid 38.2 35.92
CDX80931 Canola cytosol 42.7 35.62
Bra009407.1-P Field mustard cytosol 40.82 35.5
AT1G56430.1 Thale cress cytosol 43.07 35.49
CDY28616 Canola cytosol 42.32 35.31
CDY17383 Canola cytosol 42.32 35.31
CDX70180 Canola cytosol 41.95 34.46
KRH43850 Soybean cytosol 36.33 33.92
KRH13614 Soybean cytosol 36.33 33.92
KXG39528 Sorghum cytosol 75.66 33.44
HORVU4Hr1G089870.1 Barley cytosol 26.22 33.33
HORVU6Hr1G090180.2 Barley nucleus 74.53 32.62
Zm00001d028887_P001 Maize cytosol 70.41 31.28
Zm00001d028888_P001 Maize cytosol, extracellular 70.04 31.11
Bra004521.1-P Field mustard cytosol 17.23 24.86
GSMUA_Achr11P... Banana cytosol 50.56 22.84
Zm00001d047639_P004 Maize extracellular 72.28 19.51
CDY01124 Canola cytosol 7.87 16.67
CDY09316 Canola cytosol 5.62 14.56
Protein Annotations
EnsemblPlants:HORVU6Hr1G032290.1EnsemblPlantsGene:HORVU6Hr1G032290Gene3D:3.40.50.150GO:GO:0003674GO:GO:0003824GO:GO:0008150
GO:GO:0008152GO:GO:0009058GO:GO:0009987GO:GO:0016740GO:GO:0030410GO:GO:0030418
InterPro:IPR004298InterPro:Nicotian_synthInterPro:SAM-dependent_MTasesPANTHER:PTHR32266PANTHER:PTHR32266:SF10PFAM:PF03059
PFscan:PS51142SUPFAM:SSF53335UniParc:UPI000296C00AUniProt:M0X111MapMan:25.4.3.1.1:
Description
Nicotianamine synthase 1 [Source:UniProtKB/TrEMBL;Acc:M0X111]
Coordinates
chrchr6H:+:140876116..140877541
Molecular Weight (calculated)
28555.1 Da
IEP (calculated)
5.713
GRAVY (calculated)
0.089
Length
267 amino acids
Sequence
(BLAST)
001: MREALIRLCS AAEGKLEAHY ADLLATFDNP LDHLGLFPYY SNYVNLSRLE YELLARHVPG IAPARVAFVG SGPLPFSSLV LAAHHLPETQ FDNYDLCGAA
101: NERARKLFGA SADGVGARMS FHTADVADLT QELGAYDVVF LAALVGMAAE EKAKVIAHLG AHMVEGASLV VRSAHGARGF LYPIVDPEDI RRGGFEVLAV
201: HHPEGEVINS VIVARKAVEA QLSGPQNGDA HARGAVPLVS PPCNFSTKME ASALEKSEEL TAKELAF
Best Arabidopsis Sequence Match ( AT4G26483.1 )
(BLAST)
1: MDPGALLMLR SARGLRSFLY VDVDPCDLKG FEVLEIYHPS MSDGFVNSVM VARKLTDRLI KYEWSRLEPY LWNKADDDFP NEAL
Arabidopsis Description
Nicotianamine synthase [Source:UniProtKB/TrEMBL;Acc:F4JUZ6]
SUBAcon: [plastid,extracellular,cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.