Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6D01G148000.1 | Wheat | cytosol | 98.48 | 98.48 |
| TraesCS6B01G186100.1 | Wheat | cytosol | 98.18 | 98.18 |
| TraesCS6A01G165100.1 | Wheat | cytosol | 97.87 | 97.87 |
| HORVU6Hr1G032290.1 | Barley | cytosol | 77.51 | 95.51 |
| Os03t0307200-01 | Rice | endoplasmic reticulum | 75.38 | 76.07 |
| TraesCS6B01G425200.1 | Wheat | cytosol, peroxisome, plastid | 75.08 | 74.85 |
| TraesCS4B01G183900.1 | Wheat | cytosol | 74.77 | 74.55 |
| TraesCS2B01G060800.1 | Wheat | cytosol | 73.86 | 73.64 |
| Zm00001d047651_P001 | Maize | cytosol, endoplasmic reticulum, extracellular | 71.73 | 72.17 |
| Zm00001d047658_P001 | Maize | cytosol | 71.73 | 72.17 |
| Zm00001d047656_P001 | Maize | cytosol | 70.52 | 70.95 |
| TraesCS3B01G068500.1 | Wheat | cytosol | 37.99 | 69.44 |
| TraesCS3B01G068400.1 | Wheat | cytosol | 37.69 | 68.89 |
| TraesCS2B01G047100.2 | Wheat | cytosol | 62.31 | 65.92 |
| TraesCS2B01G111100.1 | Wheat | cytosol | 60.79 | 58.82 |
| TraesCS6B01G438900.1 | Wheat | cytosol, plastid | 49.85 | 50.0 |
| GSMUA_Achr2P00420_001 | Banana | cytosol | 45.29 | 47.15 |
| GSMUA_Achr5P21100_001 | Banana | cytosol | 44.07 | 46.03 |
| KRG96720 | Soybean | cytosol | 39.51 | 41.27 |
| PGSC0003DMT400007275 | Potato | cytosol | 39.51 | 41.01 |
| KXG39528 | Sorghum | cytosol | 75.08 | 40.89 |
| KRH36982 | Soybean | cytosol | 38.3 | 40.78 |
| Solyc01g100490.2.1 | Tomato | cytosol | 39.21 | 40.69 |
| VIT_14s0060g01190.t01 | Wine grape | cytosol | 39.21 | 39.94 |
| KRH68436 | Soybean | cytosol | 38.91 | 39.88 |
| Bra038164.1-P | Field mustard | cytosol | 38.91 | 39.63 |
| CDX94325 | Canola | cytosol | 33.43 | 39.57 |
| CDY39002 | Canola | cytosol | 38.6 | 39.44 |
| AT1G09240.1 | Thale cress | cytosol | 38.3 | 39.38 |
| CDY42364 | Canola | cytosol | 38.3 | 39.13 |
| Bra018573.1-P | Field mustard | cytosol | 38.3 | 39.01 |
| CDX94991 | Canola | cytosol | 38.3 | 39.01 |
| AT1G56430.1 | Thale cress | cytosol | 38.3 | 38.89 |
| CDY69948 | Canola | cytosol | 32.83 | 38.85 |
| CDX98807 | Canola | cytosol | 34.95 | 38.72 |
| CDX93517 | Canola | cytosol | 37.99 | 38.7 |
| Zm00001d028887_P001 | Maize | cytosol | 70.52 | 38.6 |
| AT5G04950.1 | Thale cress | cytosol | 37.39 | 38.44 |
| Zm00001d028888_P001 | Maize | cytosol, extracellular | 70.21 | 38.44 |
| CDY28616 | Canola | cytosol | 37.08 | 38.12 |
| CDY06526 | Canola | cytosol | 36.78 | 37.81 |
| AT5G56080.1 | Thale cress | cytosol | 36.78 | 37.81 |
| Bra005831.1-P | Field mustard | cytosol | 36.78 | 37.81 |
| Bra035602.1-P | Field mustard | cytosol | 36.78 | 37.81 |
| CDY64985 | Canola | cytosol | 36.78 | 37.81 |
| VIT_11s0052g01150.t01 | Wine grape | plastid | 32.52 | 37.68 |
| CDY17383 | Canola | cytosol | 36.47 | 37.5 |
| CDY46596 | Canola | cytosol | 23.71 | 37.5 |
| Bra009407.1-P | Field mustard | cytosol | 34.95 | 37.46 |
| CDY11321 | Canola | cytosol | 36.17 | 37.19 |
| Bra002851.1-P | Field mustard | cytosol | 36.17 | 37.19 |
| KRH43850 | Soybean | cytosol | 32.22 | 37.06 |
| AT4G26483.1 | Thale cress | cytosol, extracellular, plastid | 9.42 | 36.9 |
| CDX80931 | Canola | cytosol | 35.87 | 36.88 |
| CDX70180 | Canola | cytosol | 36.17 | 36.62 |
| KRH13614 | Soybean | cytosol | 31.61 | 36.36 |
| Bra004521.1-P | Field mustard | cytosol | 15.81 | 28.11 |
| GSMUA_Achr11P... | Banana | cytosol | 43.47 | 24.2 |
| Zm00001d047639_P004 | Maize | extracellular | 72.64 | 24.17 |
| CDY01124 | Canola | cytosol | 8.81 | 23.02 |
| CDY09316 | Canola | cytosol | 6.38 | 20.39 |
Protein Annotations
| EnsemblPlants:TraesCS6B01G187400.1 | EnsemblPlantsGene:TraesCS6B01G187400 | Gene3D:3.40.50.150 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016740 | GO:GO:0030410 | GO:GO:0030418 |
| InterPro:IPR004298 | InterPro:Nicotian_synth | InterPro:SAM-dependent_MTases | ncoils:Coil | PANTHER:PTHR32266 | PANTHER:PTHR32266:SF10 |
| PFAM:PF03059 | PFscan:PS51142 | SUPFAM:SSF53335 | MapMan:25.4.3.1.1 | : | : |
Description
No Description!
Coordinates
chr6B:-:213487339..213488328
Molecular Weight (calculated)
35167.0 Da
IEP (calculated)
5.367
GRAVY (calculated)
0.045
Length
329 amino acids
Sequence
(BLAST)
(BLAST)
001: MDAQNKEVAA LIEKIAGLQA AIAELPSLSP SPEVDRLFTD LVTACVPPSP VDVAKLSPEH QRMREALIRL CSAAEGKLEA HYADLLATFD NPLDHLGRFP
101: YYSNYVNLSR LEYELLARHV PGIAPARVAF VGSGPLPFSS FVLAAHHLPD AQFDNYDLCG AANERARKLF GASEDGVGAR MKFHTADVAD LTQELGAYDV
201: VFLAALVGMA AEEKAKVIAH LGAHMVEGAS LVVRSAHGAR GFLYPIVDPE DIRRGGFEVL AVHHPEGEVI NSVIVARKAV DAQLSGPQNG DAHARGAVPL
301: VSSPCSFSTK MEAGALEKSE ELATKELAF
101: YYSNYVNLSR LEYELLARHV PGIAPARVAF VGSGPLPFSS FVLAAHHLPD AQFDNYDLCG AANERARKLF GASEDGVGAR MKFHTADVAD LTQELGAYDV
201: VFLAALVGMA AEEKAKVIAH LGAHMVEGAS LVVRSAHGAR GFLYPIVDPE DIRRGGFEVL AVHHPEGEVI NSVIVARKAV DAQLSGPQNG DAHARGAVPL
301: VSSPCSFSTK MEAGALEKSE ELATKELAF
1: MDPGALLMLR SARGLRSFLY VDVDPCDLKG FEVLEIYHPS MSDGFVNSVM VARKLTDRLI KYEWSRLEPY LWNKADDDFP NEAL
Arabidopsis Description
Nicotianamine synthase [Source:UniProtKB/TrEMBL;Acc:F4JUZ6]
SUBAcon: [plastid,extracellular,cytosol]
SUBAcon: [plastid,extracellular,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.