Subcellular Localization
min:
: max
Winner_takes_all: plastid, extracellular, cytosol
Predictor Summary:
Predictor Summary:
- extracellular 2
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- mitochondrion 2
- cytosol 1
- nucleus 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU7Hr1G078010.1 | Barley | cytosol | 43.28 | 21.32 |
| HORVU1Hr1G008160.1 | Barley | cytosol | 41.79 | 18.42 |
| HORVU3Hr1G113750.1 | Barley | cytosol | 41.79 | 18.06 |
| HORVU2Hr1G056160.5 | Barley | cytosol | 40.3 | 16.07 |
| HORVU3Hr1G054660.1 | Barley | cytosol | 46.27 | 12.7 |
| HORVU6Hr1G023630.1 | Barley | cytosol | 44.78 | 12.5 |
| HORVU0Hr1G018470.1 | Barley | cytosol | 44.78 | 12.35 |
| HORVU4Hr1G047410.2 | Barley | cytosol, mitochondrion, peroxisome | 44.78 | 11.86 |
| HORVU0Hr1G025410.1 | Barley | cytosol | 41.79 | 9.3 |
| HORVU4Hr1G048730.1 | Barley | cytosol | 41.79 | 9.27 |
| Os04t0654700-02 | Rice | cytosol | 49.25 | 9.17 |
| VIT_03s0038g04360.t01 | Wine grape | cytosol | 49.25 | 9.17 |
| Zm00001d002027_P002 | Maize | extracellular | 49.25 | 9.12 |
| KXG27287 | Sorghum | cytosol | 49.25 | 8.85 |
| TraesCS2A01G504600.1 | Wheat | cytosol | 46.27 | 8.52 |
| TraesCS2D01G505300.1 | Wheat | golgi, unclear | 46.27 | 8.52 |
| CDY12502 | Canola | cytosol | 43.28 | 8.22 |
| HORVU2Hr1G112000.1 | Barley | cytosol | 47.76 | 8.04 |
| VIT_18s0001g10820.t01 | Wine grape | cytosol | 23.88 | 5.18 |
| HORVU3Hr1G021300.1 | Barley | cytosol, plastid | 4.48 | 1.82 |
| HORVU2Hr1G067660.1 | Barley | cytosol, peroxisome | 0.0 | 0.0 |
Protein Annotations
| Gene3D:3.40.140.10 | MapMan:35.2 | ProteinID:CCB56489 | ProteinID:CCB56489.1 | InterPro:CSN5 | UniProt:F6HP83 |
| EMBL:FN596000 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004222 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006508 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008180 |
| GO:GO:0016787 | GO:GO:0019538 | PANTHER:PTHR10410 | PANTHER:PTHR10410:SF6 | UniParc:UPI0002108004 | ArrayExpress:VIT_16s0100g00150 |
| EnsemblPlantsGene:VIT_16s0100g00150 | EnsemblPlants:VIT_16s0100g00150.t01 | : | : | : | : |
Description
No Description!
Coordinates
chr16:-:15466153..15466483
Molecular Weight (calculated)
7679.1 Da
IEP (calculated)
7.182
GRAVY (calculated)
-0.328
Length
67 amino acids
Sequence
(BLAST)
(BLAST)
1: MEAGFQVLMF QHKCSVNNCR NPFLAVVIDP VRIVSAGKVE FGAFRTYPKR YEPPDDPDWG TWESARC
001: MEGSSSTIAR KTWELENSIL TVDSPDSTSD NIFYYDDTSQ TRFQQEKPWE NDPHYFKRVK ISALALLKMV VHARSGGTIE IMGLMQGKTD GDTIIVMDAF
101: ALPVEGTETR VNAQDDAYEY MVEYSQTNKL AGRLENVVGW YHSHPGYGCW LSGIDVSTQR LNQQHQEPFL AVVIDPTRTV SAGKVEIGAF RTYSKGYKPP
201: DEPVSEYQTI PLNKIEDFGV HCKQYYSLDV TYFKSSLDSH LLDLLWNKYW VNTLSSSPLL GNGDYVAGQI SDLAEKLEQA ESHLVQSRFG GVVPSSLHKK
301: KEDESQLTKI TRDSAKITVE QVHGLMSQVI KDELFNSMRQ SNNKSPTDSS DPDPMITY
101: ALPVEGTETR VNAQDDAYEY MVEYSQTNKL AGRLENVVGW YHSHPGYGCW LSGIDVSTQR LNQQHQEPFL AVVIDPTRTV SAGKVEIGAF RTYSKGYKPP
201: DEPVSEYQTI PLNKIEDFGV HCKQYYSLDV TYFKSSLDSH LLDLLWNKYW VNTLSSSPLL GNGDYVAGQI SDLAEKLEQA ESHLVQSRFG GVVPSSLHKK
301: KEDESQLTKI TRDSAKITVE QVHGLMSQVI KDELFNSMRQ SNNKSPTDSS DPDPMITY
Arabidopsis Description
CSN5BCOP9 signalosome complex subunit 5b [Source:UniProtKB/Swiss-Prot;Acc:Q9FVU9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.