Skip to main content
crop-pal logo
Wine grape
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 3
  • cytosol 3
  • mitochondrion 1
PPI

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G22920.1 VIT_15s0021g01580.t01 AT1G02090.1 11742986
AT1G22920.1 VIT_04s0043g00870.t01 AT1G08530.1 21798944
AT1G22920.1 VIT_09s0002g05270.t01 AT1G15550.1 21798944
AT1G22920.1 VIT_09s0002g05300.t01 AT1G15550.1 21798944
AT1G22920.1 VIT_11s0016g00710.t01 AT1G19180.1 21798944
AT1G22920.1 VIT_18s0001g05810.t01 AT1G22840.1 21798944
AT1G22920.1 VIT_01s0010g01410.t01 AT1G50300.1 21798944
AT1G22920.1 VIT_09s0002g07500.t01 AT1G52510.1 21798944
AT1G22920.1 VIT_09s0002g07060.t01 AT1G52540.1 21798944
AT1G22920.1 VIT_02s0087g00270.t01 AT1G61590.1 21798944
AT1G22920.1 VIT_16s0039g01640.t01 AT1G65000.1 21798944
AT1G22920.1 VIT_01s0011g03450.t01 AT1G68560.1 21798944
AT1G22920.1 VIT_01s0011g04630.t01 AT2G01290.1 21798944
AT1G22920.1 VIT_06s0004g03340.t01 AT2G01290.1 21798944
AT1G22920.1 VIT_01s0137g00010.t01 AT2G02050.1 21798944
AT1G22920.1 VIT_03s0063g02610.t01 AT2G21660.1 21798944
AT1G22920.1 VIT_01s0146g00360.t01 AT2G33500.1 21798944
AT1G22920.1 VIT_14s0068g01380.t01 AT2G33500.1 21798944
AT1G22920.1 VIT_09s0002g06980.t01 AT3G15840.1 21798944
AT1G22920.1 VIT_09s0002g04010.t01 AT3G16250.1 21798944
AT1G22920.1 VIT_19s0090g00940.t01 AT3G20420.1 21798944
AT1G22920.1 VIT_05s0020g04690.t01 AT3G23050.1 21798944
AT1G22920.1 VIT_05s0049g01160.t01 AT3G23280.1 21798944
AT1G22920.1 VIT_14s0066g00370.t01 AT3G27560.1 21798944
AT1G22920.1 VIT_17s0000g06000.t01 AT3G47640.1 21798944
AT1G22920.1 VIT_01s0146g00300.t01 AT3G60820.1 21798944
AT1G22920.1 VIT_15s0048g00900.t01 AT3G60820.1 21798944
AT1G22920.1 VIT_15s0048g01980.t01 AT3G61140.1 12615944
AT1G22920.1 VIT_15s0048g01980.t01 AT3G61140.1 9811788
AT1G22920.1 VIT_05s0077g02340.t01 AT3G62790.1 21798944
AT1G22920.1 VIT_15s0046g00090.t01 AT4G07950.1 21798944
AT1G22920.1 VIT_18s0001g05810.t01 AT4G10040.1 21798944
AT1G22920.1 VIT_12s0055g00390.t01 AT4G14110.1 11701877
AT1G22920.1 VIT_12s0055g00390.t01 AT4G14110.1 11742986
AT1G22920.1 VIT_19s0015g01950.t01 AT4G26430.1 11742986
AT1G22920.1 VIT_04s0023g00400.t01 AT5G16490.1 21798944
AT1G22920.1 VIT_19s0090g00430.t01 AT5G42300.1 21798944
AT1G22920.1 VIT_12s0035g01450.t01 AT5G42970.1 12615944
AT1G22920.1 VIT_18s0001g12250.t01 AT5G42970.1 12615944
AT1G22920.1 VIT_02s0236g00140.t01 AT5G47100.1 21798944
AT1G22920.1 VIT_02s0236g00150.t01 AT5G47100.1 21798944
AT1G22920.1 VIT_16s0039g02680.t01 AT5G51170.1 21798944
AT1G22920.1 VIT_19s0015g01950.t01 AT5G56280.1 11701877
AT1G22920.1 VIT_19s0015g01950.t01 AT5G56280.1 11742986
AT1G22920.1 VIT_19s0015g01950.t01 AT5G56280.1 12615944
AT1G22920.1 VIT_19s0015g01950.t01 AT5G56280.1 21798944
AT1G22920.1 VIT_06s0004g00140.t01 AT5G56360.1 21798944
AT1G22920.1 VIT_06s0004g06970.t01 AT5G58575.1 21798944
AT1G71230.1 VIT_15s0021g01580.t01 AT1G02090.1 11742986
AT1G71230.1 VIT_19s0177g00100.t01 AT1G54290.1 21798944
AT1G71230.1 VIT_14s0060g01340.t01 AT1G56330.1 21798944
AT1G71230.1 VIT_16s0013g00170.t01 AT1G56330.1 21798944
AT1G71230.1 VIT_14s0060g01190.t01 AT1G56430.1 21798944
AT1G71230.1 VIT_07s0005g00850.t01 AT2G40940.1 21798944
AT1G71230.1 VIT_12s0028g02240.t01 AT2G42580.1 21798944
AT1G71230.1 VIT_18s0001g09830.t01 AT2G42580.1 21798944
AT1G71230.1 VIT_08s0007g04160.t01 AT3G10030.1 21798944
AT1G71230.1 VIT_09s0054g00440.t01 AT3G21175.1 21798944
AT1G71230.1 VIT_06s0080g01090.t01 AT3G44260.1 21798944
AT1G71230.1 VIT_02s0012g00610.t01 AT3G59840.1 21798944
AT1G71230.1 VIT_15s0046g02900.t01 AT4G00710.1 21798944
AT1G71230.1 VIT_12s0055g00390.t01 AT4G14110.1 11742986
AT1G71230.1 VIT_00s2082g00010.t01 AT4G22720.1 21798944
AT1G71230.1 VIT_17s0000g08810.t01 AT4G24680.1 21798944
AT1G71230.1 VIT_19s0015g01950.t01 AT4G26430.1 11742986
AT1G71230.1 VIT_03s0038g02090.t01 AT4G38690.1 21798944
AT1G71230.1 VIT_13s0084g00240.t01 AT5G07010.1 21798944
AT1G71230.1 VIT_13s0084g00250.t01 AT5G07010.1 21798944
AT1G71230.1 VIT_04s0008g03630.t01 AT5G11550.1 21798944
AT1G71230.1 VIT_14s0171g00270.t01 AT5G14250.1 11742986
AT1G71230.1 VIT_13s0047g00210.t01 AT5G24530.1 21798944
AT1G71230.1 VIT_16s0098g00860.t01 AT5G24530.1 21798944
AT1G71230.1 VIT_12s0035g01450.t01 AT5G42970.1 11742986
AT1G71230.1 VIT_18s0001g12250.t01 AT5G42970.1 11742986
AT1G71230.1 VIT_08s0007g00070.t01 AT5G54580.1 21798944
AT1G71230.1 VIT_19s0015g01950.t01 AT5G56280.1 11742986
AT1G71230.1 VIT_17s0000g07890.t01 AT5G62880.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400023896 Potato cytosol 90.28 88.56
PGSC0003DMT400069203 Potato cytosol 89.17 87.47
Solyc11g017300.1.1 Tomato cytosol 89.17 87.47
Solyc06g073150.2.1 Tomato cytosol 88.61 86.92
KRH61926 Soybean nucleus 90.28 86.9
Bra024548.1-P Field mustard cytosol 82.22 83.15
CDY04768 Canola cytosol 82.22 83.15
CDY21400 Canola cytosol 82.22 83.15
AT1G71230.1 Thale cress cytosol 82.22 82.68
GSMUA_Achr10P... Banana cytosol 84.44 82.61
AT1G22920.1 Thale cress cytosol 81.67 82.35
CDY25761 Canola cytosol 79.72 80.62
Bra012351.1-P Field mustard cytosol 79.44 80.34
KRH52586 Soybean cytosol, nucleus 90.28 79.46
VIT_16s0100g00150.t01 Wine grape cytosol, extracellular, plastid 9.17 49.25
VIT_18s0001g10820.t01 Wine grape cytosol 25.0 29.13
Protein Annotations
EntrezGene:100265887wikigene:100265887MapMan:19.2.3.3.1.5Gene3D:3.40.140.10ProteinID:CCB60496ProteinID:CCB60496.1
UniProt:F6I0N0EMBL:FN596508GO:GO:0003674GO:GO:0005488GO:GO:0005515InterPro:IPR037518
InterPro:JAMM/MPN+_domEntrezGene:LOC100265887wikigene:LOC100265887MEROPS:M67.002InterPro:MPNPFAM:PF01398
PFscan:PS50249PANTHER:PTHR10410PANTHER:PTHR10410:SF14SMART:SM00232SUPFAM:SSF102712TIGR:TC60517
UniParc:UPI0001982DA0ArrayExpress:VIT_03s0038g04360EnsemblPlantsGene:VIT_03s0038g04360EnsemblPlants:VIT_03s0038g04360.t01unigene:Vvi.7479RefSeq:XP_002283561
RefSeq:XP_002283561.1SEG:seg::::
Description
No Description!
Coordinates
chr3:-:3165510..3173838
Molecular Weight (calculated)
40286.4 Da
IEP (calculated)
4.761
GRAVY (calculated)
-0.409
Length
360 amino acids
Sequence
(BLAST)
001: MEPYSFTSSA SIAQKTWELE NNIASMDAPS ADSDSIFFYD DAAQAKFQQE KPWANDPHYF KRVKISALAL LKMVVHARSG GNIEVMGLMQ GKTDGDAIIV
101: MDAFALPVEG TETRVNAQAD AYEYMVDYSQ TNKQAGRLEN VVGWYHSHPG YGCWLSGIDV STQMLNQQFQ EPFLAVVIDP TRTVSAGKVE IGAFRTYPEG
201: YKPPDDPVSE YQTIPLNKIE DFGVHCKQYY ALDITYFKSS LDCHLLDLLW NKYWVNTLSS SPLLGNGDYV AGQISDLAEK LEQAENQLAH SRFGPLIAPS
301: QRKKEEESQL AKITRDSAKI TVEQVHGLMS QVIKDILFNS VRQSNRSRTE PSGPEPMIET
Best Arabidopsis Sequence Match ( AT1G71230.1 )
(BLAST)
001: MEGSSSTIAR KTWELENSIL TVDSPDSTSD NIFYYDDTSQ TRFQQEKPWE NDPHYFKRVK ISALALLKMV VHARSGGTIE IMGLMQGKTD GDTIIVMDAF
101: ALPVEGTETR VNAQDDAYEY MVEYSQTNKL AGRLENVVGW YHSHPGYGCW LSGIDVSTQR LNQQHQEPFL AVVIDPTRTV SAGKVEIGAF RTYSKGYKPP
201: DEPVSEYQTI PLNKIEDFGV HCKQYYSLDV TYFKSSLDSH LLDLLWNKYW VNTLSSSPLL GNGDYVAGQI SDLAEKLEQA ESHLVQSRFG GVVPSSLHKK
301: KEDESQLTKI TRDSAKITVE QVHGLMSQVI KDELFNSMRQ SNNKSPTDSS DPDPMITY
Arabidopsis Description
CSN5BCOP9 signalosome complex subunit 5b [Source:UniProtKB/Swiss-Prot;Acc:Q9FVU9]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.