Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 3
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
PGSC0003DMT400023896 | Potato | cytosol | 90.28 | 88.56 |
PGSC0003DMT400069203 | Potato | cytosol | 89.17 | 87.47 |
Solyc11g017300.1.1 | Tomato | cytosol | 89.17 | 87.47 |
Solyc06g073150.2.1 | Tomato | cytosol | 88.61 | 86.92 |
KRH61926 | Soybean | nucleus | 90.28 | 86.9 |
Bra024548.1-P | Field mustard | cytosol | 82.22 | 83.15 |
CDY04768 | Canola | cytosol | 82.22 | 83.15 |
CDY21400 | Canola | cytosol | 82.22 | 83.15 |
AT1G71230.1 | Thale cress | cytosol | 82.22 | 82.68 |
GSMUA_Achr10P... | Banana | cytosol | 84.44 | 82.61 |
AT1G22920.1 | Thale cress | cytosol | 81.67 | 82.35 |
CDY25761 | Canola | cytosol | 79.72 | 80.62 |
Bra012351.1-P | Field mustard | cytosol | 79.44 | 80.34 |
KRH52586 | Soybean | cytosol, nucleus | 90.28 | 79.46 |
VIT_16s0100g00150.t01 | Wine grape | cytosol, extracellular, plastid | 9.17 | 49.25 |
VIT_18s0001g10820.t01 | Wine grape | cytosol | 25.0 | 29.13 |
Protein Annotations
EntrezGene:100265887 | wikigene:100265887 | MapMan:19.2.3.3.1.5 | Gene3D:3.40.140.10 | ProteinID:CCB60496 | ProteinID:CCB60496.1 |
UniProt:F6I0N0 | EMBL:FN596508 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | InterPro:IPR037518 |
InterPro:JAMM/MPN+_dom | EntrezGene:LOC100265887 | wikigene:LOC100265887 | MEROPS:M67.002 | InterPro:MPN | PFAM:PF01398 |
PFscan:PS50249 | PANTHER:PTHR10410 | PANTHER:PTHR10410:SF14 | SMART:SM00232 | SUPFAM:SSF102712 | TIGR:TC60517 |
UniParc:UPI0001982DA0 | ArrayExpress:VIT_03s0038g04360 | EnsemblPlantsGene:VIT_03s0038g04360 | EnsemblPlants:VIT_03s0038g04360.t01 | unigene:Vvi.7479 | RefSeq:XP_002283561 |
RefSeq:XP_002283561.1 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr3:-:3165510..3173838
Molecular Weight (calculated)
40286.4 Da
IEP (calculated)
4.761
GRAVY (calculated)
-0.409
Length
360 amino acids
Sequence
(BLAST)
(BLAST)
001: MEPYSFTSSA SIAQKTWELE NNIASMDAPS ADSDSIFFYD DAAQAKFQQE KPWANDPHYF KRVKISALAL LKMVVHARSG GNIEVMGLMQ GKTDGDAIIV
101: MDAFALPVEG TETRVNAQAD AYEYMVDYSQ TNKQAGRLEN VVGWYHSHPG YGCWLSGIDV STQMLNQQFQ EPFLAVVIDP TRTVSAGKVE IGAFRTYPEG
201: YKPPDDPVSE YQTIPLNKIE DFGVHCKQYY ALDITYFKSS LDCHLLDLLW NKYWVNTLSS SPLLGNGDYV AGQISDLAEK LEQAENQLAH SRFGPLIAPS
301: QRKKEEESQL AKITRDSAKI TVEQVHGLMS QVIKDILFNS VRQSNRSRTE PSGPEPMIET
101: MDAFALPVEG TETRVNAQAD AYEYMVDYSQ TNKQAGRLEN VVGWYHSHPG YGCWLSGIDV STQMLNQQFQ EPFLAVVIDP TRTVSAGKVE IGAFRTYPEG
201: YKPPDDPVSE YQTIPLNKIE DFGVHCKQYY ALDITYFKSS LDCHLLDLLW NKYWVNTLSS SPLLGNGDYV AGQISDLAEK LEQAENQLAH SRFGPLIAPS
301: QRKKEEESQL AKITRDSAKI TVEQVHGLMS QVIKDILFNS VRQSNRSRTE PSGPEPMIET
001: MEGSSSTIAR KTWELENSIL TVDSPDSTSD NIFYYDDTSQ TRFQQEKPWE NDPHYFKRVK ISALALLKMV VHARSGGTIE IMGLMQGKTD GDTIIVMDAF
101: ALPVEGTETR VNAQDDAYEY MVEYSQTNKL AGRLENVVGW YHSHPGYGCW LSGIDVSTQR LNQQHQEPFL AVVIDPTRTV SAGKVEIGAF RTYSKGYKPP
201: DEPVSEYQTI PLNKIEDFGV HCKQYYSLDV TYFKSSLDSH LLDLLWNKYW VNTLSSSPLL GNGDYVAGQI SDLAEKLEQA ESHLVQSRFG GVVPSSLHKK
301: KEDESQLTKI TRDSAKITVE QVHGLMSQVI KDELFNSMRQ SNNKSPTDSS DPDPMITY
101: ALPVEGTETR VNAQDDAYEY MVEYSQTNKL AGRLENVVGW YHSHPGYGCW LSGIDVSTQR LNQQHQEPFL AVVIDPTRTV SAGKVEIGAF RTYSKGYKPP
201: DEPVSEYQTI PLNKIEDFGV HCKQYYSLDV TYFKSSLDSH LLDLLWNKYW VNTLSSSPLL GNGDYVAGQI SDLAEKLEQA ESHLVQSRFG GVVPSSLHKK
301: KEDESQLTKI TRDSAKITVE QVHGLMSQVI KDELFNSMRQ SNNKSPTDSS DPDPMITY
Arabidopsis Description
CSN5BCOP9 signalosome complex subunit 5b [Source:UniProtKB/Swiss-Prot;Acc:Q9FVU9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.