Factsheet for VIT_08s0007g00070.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 6
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_09s0018g01880.t01
VIT_16s0098g00600.t01
VIT_16s0098g01660.t01
VIT_17s0000g00270.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G54580.1	VIT_17s0000g00270.t01	AT2G33550.1	21798944
AT5G54580.1	VIT_09s0018g01880.t01	AT3G21215.1	21798944
AT5G54580.1	VIT_16s0098g00600.t01	AT3G49580.1	21798944
AT5G54580.1	VIT_16s0098g01660.t01	AT5G53060.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_19s0014g04770.t01	Wine grape	mitochondrion	54.89	54.07
KRH55574	Soybean	mitochondrion, plastid	56.39	51.72
KRH25927	Soybean	mitochondrion, plastid	54.89	50.34
Bra002976.1-P	Field mustard	mitochondrion	39.1	50.0
Zm00001d024675_P001	Maize	mitochondrion	50.38	47.86
EES14515	Sorghum	plastid	50.38	47.86
Os08t0139000-02	Rice	mitochondrion	48.87	46.1
CDY43035	Canola	plastid	50.38	43.79
CDY42466	Canola	plastid	50.38	43.79
Bra029020.1-P	Field mustard	plastid	50.38	43.79
CDY64931	Canola	plastid	49.62	43.14
CDY43820	Canola	plastid	50.38	42.68
AT5G54580.1	Thale cress	mitochondrion, plastid	49.62	42.31
TraesCS7B01G207500.1	Wheat	mitochondrion	47.37	41.45
TraesCS7A01G307200.1	Wheat	plastid	46.62	40.52
VIT_08s0040g03330.t01	Wine grape	plastid	39.1	37.14
VIT_06s0004g04260.t01	Wine grape	mitochondrion	24.81	31.13
VIT_08s0007g02860.t01	Wine grape	mitochondrion	30.08	30.08
VIT_06s0080g00870.t01	Wine grape	plastid	21.8	26.13
VIT_05s0029g00440.t01	Wine grape	mitochondrion, nucleus, plastid	27.82	24.34
VIT_05s0094g00380.t01	Wine grape	mitochondrion	18.05	21.82
VIT_12s0059g01210.t01	Wine grape	mitochondrion	19.55	18.57
VIT_17s0053g00760.t01	Wine grape	plastid	21.05	17.61
VIT_03s0063g02610.t01	Wine grape	nucleus	21.05	17.28
VIT_17s0000g07330.t01	Wine grape	plastid	27.82	13.36
VIT_18s0166g00180.t01	Wine grape	mitochondrion	27.07	12.63
VIT_08s0007g04870.t01	Wine grape	cytosol	18.8	10.08
VIT_13s0019g05080.t01	Wine grape	nucleus	17.29	8.27
VIT_13s0106g00500.t01	Wine grape	plastid	23.31	7.58

Protein Annotations

EntrezGene:100254516	wikigene:100254516	MapMan:16.12.5.2	Gene3D:3.30.70.330	ProteinID:CBI30580	ProteinID:CBI30580.3
UniProt:D7THR4	EMBL:FN595991	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488
InterPro:IPR000504	InterPro:IPR012677	EntrezGene:LOC100254516	wikigene:LOC100254516	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076
PFscan:PS50102	PANTHER:PTHR45392	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928
TIGR:TC61959	UniParc:UPI00015C9EA2	ArrayExpress:VIT_08s0007g00070	EnsemblPlantsGene:VIT_08s0007g00070	EnsemblPlants:VIT_08s0007g00070.t01	unigene:Vvi.12475
RefSeq:XP_002263021	RefSeq:XP_002263021.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr8:+:14455116..14458410

Molecular Weight (calculated)

14448.1 Da

IEP (calculated)

10.101

GRAVY (calculated)

-0.304

Length

133 amino acids

Sequence
(BLAST)

001: MATRAGLLKR FFSTSMFSSQ TTAAANAKPA PIPSTTLFIS GLNKRTTSEK LNEEASKFGE VVHARVVTDR SSGYSKGFGF VKYATIAQAE QGIKGLDAQF
101: LDGWVIFAEF ARSRTPPGYL ASTEKNTHQA EMD

Best Arabidopsis Sequence Match ( AT5G54580.1 )
(BLAST)

001: MAMAMRLPAI SRAVTEVASA PVGLRRLFCS NASRFSFLSP QAESQTPARP QAEPSTNLFV SGLSKRTTSE GLRTAFAQFG EVADAKVVTD RVSGYSKGFG
101: FVRYATLEDS AKGIAGMDGK FLDGWVIFAE YARPREQSQS YQPQNNMSRP PYYGNR

Arabidopsis Description

ORRM2Organelle RRM domain-containing protein 2, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9FIU6]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.