Factsheet for VIT_12s0059g01210.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 7
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400001786	Potato	nucleus	35.0	70.0
KRH17905	Soybean	cytosol, mitochondrion, nucleus	37.86	63.86
OQU88096	Sorghum	cytosol, mitochondrion, nucleus	29.29	63.08
Solyc07g049270.2.1	Tomato	mitochondrion	62.14	61.7
GSMUA_Achr11P...	Banana	mitochondrion	57.14	60.61
KXG32985	Sorghum	cytosol, mitochondrion, nucleus	28.57	59.7
AT3G08000.1	Thale cress	plastid	60.0	58.74
CDY28003	Canola	plastid	57.86	56.25
Bra029692.1-P	Field mustard	mitochondrion	55.71	54.55
CDY35978	Canola	mitochondrion, plastid	55.71	54.55
KRH50325	Soybean	vacuole	53.57	53.57
TraesCS3B01G454200.1	Wheat	mitochondrion	55.0	52.74
TraesCS3A01G418900.1	Wheat	mitochondrion	54.29	52.05
Os01t0916600-01	Rice	mitochondrion	40.71	38.0
VIT_05s0029g00440.t01	Wine grape	mitochondrion, nucleus, plastid	40.71	37.5
VIT_08s0007g02860.t01	Wine grape	mitochondrion	32.86	34.59
VIT_06s0080g00870.t01	Wine grape	plastid	26.43	33.33
Zm00001d012052_P001	Maize	mitochondrion, plastid	36.43	32.69
VIT_06s0004g04260.t01	Wine grape	mitochondrion	23.57	31.13
HORVU3Hr1G093400.1	Barley	plastid	37.14	30.95
TraesCS3D01G417800.1	Wheat	plastid	37.14	29.55
VIT_05s0094g00380.t01	Wine grape	mitochondrion	22.14	28.18
VIT_19s0014g04770.t01	Wine grape	mitochondrion	25.71	26.67
VIT_08s0040g03330.t01	Wine grape	plastid	25.71	25.71
VIT_03s0063g02610.t01	Wine grape	nucleus	28.57	24.69
VIT_08s0007g00070.t01	Wine grape	mitochondrion	18.57	19.55
VIT_17s0053g00760.t01	Wine grape	plastid	22.14	19.5
VIT_17s0000g07330.t01	Wine grape	plastid	32.86	16.61
VIT_18s0166g00180.t01	Wine grape	mitochondrion	27.86	13.68
VIT_08s0007g04870.t01	Wine grape	cytosol	22.86	12.9
VIT_13s0019g05080.t01	Wine grape	nucleus	23.57	11.87
VIT_13s0106g00500.t01	Wine grape	plastid	26.43	9.05

Protein Annotations

EntrezGene:100265324	wikigene:100265324	Gene3D:3.30.70.330	MapMan:35.1	ProteinID:CBI28852	ProteinID:CBI28852.3
UniProt:D7TEC9	EMBL:FN595765	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488
InterPro:IPR000504	InterPro:IPR012677	EntrezGene:LOC100265324	wikigene:LOC100265324	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076
PFscan:PS50102	PANTHER:PTHR15241	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928
UniParc:UPI00019846DE	ArrayExpress:VIT_12s0059g01210	EnsemblPlantsGene:VIT_12s0059g01210	EnsemblPlants:VIT_12s0059g01210.t01	unigene:Vvi.17547	RefSeq:XP_002273998
RefSeq:XP_002273998.1	RefSeq:XP_019079320.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr12:-:6135741..6138437

Molecular Weight (calculated)

15404.2 Da

IEP (calculated)

10.294

GRAVY (calculated)

-0.436

Length

140 amino acids

Sequence
(BLAST)

001: MKNSLVSLAR RALTVQNPAA DWRCFCSSPS FPTPPSNTKL FVAGLSWSVD EKSLKDAFSS FGDVTEVRIM YDKDSGRSRG FGFVYFSKEV DARSAKDAMD
101: GKAFLGRPLR VSYALEKVRG GPIVVPRRLN GGDDNNSRNS

Best Arabidopsis Sequence Match ( AT3G08000.1 )
(BLAST)

001: MMKNGIELLV RRVSAIPQHS ISSSFHFLPQ FCTSSSASPS SKLFIGGLSW SVDEQSLKDA FSSFGEVAEV RIAYDKGSGR SRGFGFVDFA EEGDALSAKD
101: AMDGKGLLGR PLRISFALER VRGGPVVVPR LGKSKRERER VFK

Arabidopsis Description

At3g08000 [Source:UniProtKB/TrEMBL;Acc:Q9SFB4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.