Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 4
- mitochondrion 3
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY35978 | Canola | mitochondrion, plastid | 92.36 | 93.01 |
| AT3G08000.1 | Thale cress | plastid | 81.94 | 82.52 |
| PGSC0003DMT400001786 | Potato | nucleus | 28.47 | 58.57 |
| OQU88096 | Sorghum | cytosol, mitochondrion, nucleus | 26.39 | 58.46 |
| VIT_12s0059g01210.t01 | Wine grape | mitochondrion | 56.25 | 57.86 |
| KRH17905 | Soybean | cytosol, mitochondrion, nucleus | 32.64 | 56.63 |
| GSMUA_Achr11P... | Banana | mitochondrion | 51.39 | 56.06 |
| KXG32985 | Sorghum | cytosol, mitochondrion, nucleus | 25.69 | 55.22 |
| Solyc07g049270.2.1 | Tomato | mitochondrion | 51.39 | 52.48 |
| TraesCS3B01G454200.1 | Wheat | mitochondrion | 47.92 | 47.26 |
| KRH50325 | Soybean | vacuole | 45.83 | 47.14 |
| TraesCS3A01G418900.1 | Wheat | mitochondrion | 47.22 | 46.58 |
| Os01t0916600-01 | Rice | mitochondrion | 37.5 | 36.0 |
| CDY47311 | Canola | mitochondrion | 34.72 | 34.72 |
| CDY06468 | Canola | mitochondrion | 34.72 | 33.78 |
| Zm00001d012052_P001 | Maize | mitochondrion, plastid | 36.11 | 33.33 |
| CDY47314 | Canola | mitochondrion | 34.72 | 33.33 |
| CDY53035 | Canola | mitochondrion | 34.72 | 33.11 |
| CDY08312 | Canola | mitochondrion | 34.72 | 32.68 |
| CDY09244 | Canola | mitochondrion | 22.92 | 31.73 |
| HORVU3Hr1G093400.1 | Barley | plastid | 36.81 | 31.55 |
| TraesCS3D01G417800.1 | Wheat | plastid | 38.19 | 31.25 |
| CDX82164 | Canola | mitochondrion | 30.56 | 30.34 |
| CDY46213 | Canola | nucleus | 25.0 | 29.51 |
| CDX82066 | Canola | cytosol, nucleus, plastid | 19.44 | 29.17 |
| CDY04982 | Canola | mitochondrion | 28.47 | 28.08 |
| CDY14089 | Canola | mitochondrion | 28.47 | 28.08 |
| CDY41969 | Canola | cytosol | 24.31 | 27.34 |
| CDY31588 | Canola | nucleus | 14.58 | 26.92 |
| CDY51614 | Canola | mitochondrion | 26.39 | 26.21 |
| CDX83260 | Canola | mitochondrion | 24.31 | 26.12 |
| CDX74955 | Canola | plastid | 25.69 | 25.52 |
| CDX91368 | Canola | plastid | 25.69 | 25.52 |
| CDY19230 | Canola | mitochondrion | 24.31 | 25.18 |
| CDY31170 | Canola | mitochondrion, nucleus | 22.92 | 25.0 |
| CDY26743 | Canola | mitochondrion | 25.0 | 24.32 |
| CDY42616 | Canola | cytosol | 25.69 | 23.57 |
| CDY72366 | Canola | nucleus | 27.08 | 22.81 |
| CDY12133 | Canola | cytosol | 25.0 | 22.78 |
| CDY15876 | Canola | nucleus | 26.39 | 22.49 |
| CDX71070 | Canola | mitochondrion | 23.61 | 22.37 |
| CDX90323 | Canola | plastid | 25.0 | 21.82 |
| CDY70933 | Canola | nucleus | 25.0 | 21.43 |
| CDY59763 | Canola | nucleus | 24.31 | 20.96 |
| CDX71276 | Canola | nucleus | 25.0 | 20.93 |
| CDY43035 | Canola | plastid | 22.22 | 20.91 |
| CDY42466 | Canola | plastid | 22.22 | 20.91 |
| CDY43820 | Canola | plastid | 22.22 | 20.38 |
| CDY64931 | Canola | plastid | 21.53 | 20.26 |
| CDY42426 | Canola | mitochondrion | 32.64 | 19.42 |
| CDY16825 | Canola | plastid | 34.72 | 19.01 |
| CDY65478 | Canola | endoplasmic reticulum | 26.39 | 18.27 |
| CDY49123 | Canola | mitochondrion | 32.64 | 17.67 |
| CDX73070 | Canola | mitochondrion | 32.64 | 17.41 |
| CDX96526 | Canola | mitochondrion | 32.64 | 16.91 |
| CDX83617 | Canola | nucleus | 25.0 | 15.52 |
| CDX87197 | Canola | plastid | 34.72 | 15.2 |
| CDY13632 | Canola | nucleus | 25.0 | 15.06 |
| CDY02175 | Canola | mitochondrion | 34.03 | 14.45 |
| CDY48990 | Canola | nucleus | 24.31 | 14.4 |
| CDY52166 | Canola | nucleus | 24.31 | 14.4 |
| CDY11283 | Canola | nucleus | 20.83 | 9.8 |
| CDY34132 | Canola | nucleus | 16.67 | 9.41 |
| CDY19589 | Canola | plastid | 24.31 | 9.38 |
| CDY06395 | Canola | nucleus | 23.61 | 8.54 |
| CDX80910 | Canola | nucleus | 11.81 | 6.51 |
Protein Annotations
| Gene3D:3.30.70.330 | MapMan:35.1 | GO:A0A078GTN0 | UniProt:A0A078GTN0 | EnsemblPlants:CDY28003 | ProteinID:CDY28003 |
| ProteinID:CDY28003.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | EnsemblPlantsGene:GSBRNA2T00038929001 |
| InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFscan:PS50102 | PANTHER:PTHR15241 |
| InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI0004EC520F | SEG:seg |
Description
BnaC05g44050DBnaC05g44050D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GTN0]
Coordinates
chrLK032213:+:167171..167914
Molecular Weight (calculated)
15860.0 Da
IEP (calculated)
10.412
GRAVY (calculated)
-0.274
Length
144 amino acids
Sequence
(BLAST)
(BLAST)
001: MRYSIEMLVR RVIAIPQHSI PSSFHVLPRF CSSSSSASPS SKLFIGGLSY SVDEQSLKDA FSSFGEVEEV RIAYDKGTGR SRGFGFVDFA DKDDALSAKH
101: AMDGKGLLGR PLRIGFALER VRGGPVVVQR FGKPNSDREK KVFK
101: AMDGKGLLGR PLRIGFALER VRGGPVVVQR FGKPNSDREK KVFK
001: MMKNGIELLV RRVSAIPQHS ISSSFHFLPQ FCTSSSASPS SKLFIGGLSW SVDEQSLKDA FSSFGEVAEV RIAYDKGSGR SRGFGFVDFA EEGDALSAKD
101: AMDGKGLLGR PLRISFALER VRGGPVVVPR LGKSKRERER VFK
101: AMDGKGLLGR PLRISFALER VRGGPVVVPR LGKSKRERER VFK
Arabidopsis Description
At3g08000 [Source:UniProtKB/TrEMBL;Acc:Q9SFB4]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.