CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 7

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY51614	Canola	mitochondrion	89.66	89.66
CDY42426	Canola	mitochondrion	78.62	47.11
CDY49123	Canola	mitochondrion	77.24	42.11
CDY06468	Canola	mitochondrion	42.76	41.89
CDX73070	Canola	mitochondrion	77.93	41.85
CDX96526	Canola	mitochondrion	78.62	41.01
CDY08312	Canola	mitochondrion	42.76	40.52
CDY19230	Canola	mitochondrion	38.62	40.29
CDY47314	Canola	mitochondrion	40.69	39.33
AT1G74230.1	Thale cress	mitochondrion, plastid	77.93	39.1
CDY53035	Canola	mitochondrion	40.69	39.07
CDY65478	Canola	endoplasmic reticulum	55.86	38.94
CDY47311	Canola	mitochondrion	38.62	38.89
CDY46213	Canola	nucleus	31.03	36.89
CDY26743	Canola	mitochondrion	37.24	36.49
CDY04982	Canola	mitochondrion	34.48	34.25
CDY14089	Canola	mitochondrion	33.79	33.56
CDY41969	Canola	cytosol	28.97	32.81
CDY09244	Canola	mitochondrion	22.07	30.77
CDY15876	Canola	nucleus	35.86	30.77
CDY28003	Canola	plastid	30.34	30.56
CDY59763	Canola	nucleus	35.17	30.54
CDY70933	Canola	nucleus	34.48	29.76
CDY12133	Canola	cytosol	32.41	29.75
CDY31588	Canola	nucleus	15.86	29.49
CDY72366	Canola	nucleus	34.48	29.24
CDY42616	Canola	cytosol	30.34	28.03
CDY35978	Canola	mitochondrion, plastid	27.59	27.97
CDX90323	Canola	plastid	31.72	27.88
PGSC0003DMT400072235	Potato	mitochondrion, nucleus	49.66	27.38
CDY16825	Canola	plastid	49.66	27.38
Solyc10g081180.1.1	Tomato	nucleus	40.69	26.82
CDX71276	Canola	nucleus	31.72	26.74
CDX74955	Canola	plastid	26.21	26.21
CDX91368	Canola	plastid	26.21	26.21
CDX83260	Canola	mitochondrion	24.14	26.12
CDX82066	Canola	cytosol, nucleus, plastid	17.24	26.04
CDY31170	Canola	mitochondrion, nucleus	23.45	25.76
CDY42466	Canola	plastid	24.14	22.88
CDX87197	Canola	plastid	51.72	22.8
CDY02175	Canola	mitochondrion	51.03	21.83
CDY43035	Canola	plastid	22.76	21.57
CDY64931	Canola	plastid	22.76	21.57
CDX71070	Canola	mitochondrion	22.07	21.05
CDY43820	Canola	plastid	22.76	21.02
CDX83617	Canola	nucleus	26.9	16.81
CDY48990	Canola	nucleus	27.59	16.46
CDY13632	Canola	nucleus	26.9	16.32
CDY52166	Canola	nucleus	26.9	16.05
CDY11283	Canola	nucleus	24.14	11.44
CDY34132	Canola	nucleus	17.93	10.2
CDY19589	Canola	plastid	23.45	9.12
CDX80910	Canola	nucleus	15.17	8.43
CDY06395	Canola	nucleus	22.76	8.29

Protein Annotations

EnsemblPlants:CDX82164	EnsemblPlantsGene:GSBRNA2T00137227001	Gene3D:3.30.70.330	GO:A0A078D1N9	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf	InterPro:RRM_dom
PANTHER:PTHR45502	PFAM:PF00076	PFscan:PS50102	ProteinID:CDX82164	ProteinID:CDX82164.1	SEG:seg
SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI0004EDF72C	MapMan:16.12.5.2	:	:

Description

BnaC02g21260D

Coordinates

chrLK031827:+:1479409..1480981

Molecular Weight (calculated)

15980.8 Da

IEP (calculated)

9.826

GRAVY (calculated)

-0.250

Length

145 amino acids

Sequence
(BLAST)

001: MAFLSKVGRI FRQTSNYVTV SNSILQSISS SKIFVGGISY STDEFGLREA FSKYGQVVNA KIIVDRETGR SRGFAFVTFT SNQEATNAMQ LDRQHLHGRR
101: IRVNFATERG SGFGGRGFGG PSGGAVFYDD PLPCGYREEF SVLCH

Best Arabidopsis Sequence Match ( AT1G74230.1 )
(BLAST)

001: MAFLSKVGRL FSQTSSHVTA SSSMLQSIRC MSSSKIFVGG ISYSTDEFGL REAFSKYGEV VDAKIIVDRE TGRSRGFAFV TFTSTEEASN AMQLDGQDLH
101: GRRIRVNYAT ERGSGFGGRG FGGPGGGYGA SDGGYGAPAG GYGGGAGGYG GNSSYSGNAG GGGGYGGNSS YGGNAGGYGG NPPYSGNAVG GGGGYGSNFG
201: GGGGYGVAGG VGGSENFAQG SSTNAGFDDK FESNQPLGND TDHQTESGLG GDEQFGGSDN QFGDAENGNT ENGPVGFDQT DDGDVAKRA

Arabidopsis Description

RBG5Glycine-rich RNA-binding protein 5, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9C909]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.