Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra025205.1-P | Field mustard | nucleus | 97.07 | 100.0 |
| CDX83617 | Canola | nucleus | 96.23 | 99.14 |
| CDY52166 | Canola | nucleus | 92.89 | 91.36 |
| CDY48990 | Canola | nucleus | 92.47 | 90.95 |
| AT3G26420.1 | Thale cress | nucleus | 87.87 | 85.71 |
| KRH42209 | Soybean | endoplasmic reticulum | 53.97 | 73.3 |
| PGSC0003DMT400076497 | Potato | nucleus | 60.25 | 70.24 |
| KRH58335 | Soybean | nucleus | 60.25 | 69.23 |
| KXG37189 | Sorghum | nucleus | 56.49 | 67.84 |
| PGSC0003DMT400045627 | Potato | nucleus | 60.25 | 67.29 |
| Os03t0836200-03 | Rice | nucleus | 57.32 | 66.83 |
| Zm00001d034768_P005 | Maize | nucleus | 56.9 | 66.34 |
| KXG24163 | Sorghum | nucleus | 56.07 | 61.47 |
| TraesCS4A01G355700.1 | Wheat | nucleus | 53.56 | 60.66 |
| TraesCS5D01G516500.1 | Wheat | nucleus | 56.07 | 60.36 |
| TraesCS5B01G516400.1 | Wheat | nucleus | 55.23 | 60.27 |
| Solyc10g047130.1.1 | Tomato | nucleus | 59.83 | 59.83 |
| TraesCS7D01G323600.1 | Wheat | nucleus | 54.39 | 56.52 |
| TraesCS7B01G227500.2 | Wheat | nucleus | 54.39 | 56.52 |
| HORVU7Hr1G078140.5 | Barley | nucleus | 54.39 | 56.52 |
| TraesCS7A01G326800.1 | Wheat | nucleus | 54.39 | 54.85 |
| VIT_18s0166g00180.t01 | Wine grape | mitochondrion | 60.25 | 50.53 |
| Solyc01g104840.2.1 | Tomato | nucleus | 46.03 | 49.33 |
| CDY59763 | Canola | nucleus | 32.64 | 46.71 |
| CDY70933 | Canola | nucleus | 32.22 | 45.83 |
| CDY42616 | Canola | cytosol | 29.71 | 45.22 |
| CDY72366 | Canola | nucleus | 31.8 | 44.44 |
| CDY15876 | Canola | nucleus | 31.38 | 44.38 |
| CDY41969 | Canola | cytosol | 23.43 | 43.75 |
| HORVU5Hr1G118010.1 | Barley | mitochondrion, nucleus | 56.9 | 43.59 |
| CDX90323 | Canola | plastid | 29.71 | 43.03 |
| CDY12133 | Canola | cytosol | 27.62 | 41.77 |
| GSMUA_Achr5P26170_001 | Banana | nucleus, peroxisome, plasma membrane | 29.29 | 41.67 |
| CDY46213 | Canola | nucleus | 20.92 | 40.98 |
| GSMUA_Achr3P22540_001 | Banana | nucleus, peroxisome, plasma membrane | 34.31 | 40.0 |
| CDX71276 | Canola | nucleus | 28.03 | 38.95 |
| GSMUA_Achr8P07840_001 | Banana | mitochondrion, nucleus, plasma membrane | 29.71 | 37.17 |
| CDY08312 | Canola | mitochondrion | 22.59 | 35.29 |
| CDY06468 | Canola | mitochondrion | 21.76 | 35.14 |
| CDY31588 | Canola | nucleus | 11.3 | 34.62 |
| CDY53035 | Canola | mitochondrion | 21.76 | 34.44 |
| CDY47311 | Canola | mitochondrion | 20.5 | 34.03 |
| CDY47314 | Canola | mitochondrion | 21.34 | 34.0 |
| CDY19230 | Canola | mitochondrion | 18.83 | 32.37 |
| CDY26743 | Canola | mitochondrion | 19.67 | 31.76 |
| CDX82066 | Canola | cytosol, nucleus, plastid | 12.55 | 31.25 |
| CDY34132 | Canola | nucleus | 30.13 | 28.24 |
| CDY09244 | Canola | mitochondrion | 12.13 | 27.88 |
| CDY11283 | Canola | nucleus | 35.56 | 27.78 |
| CDX80910 | Canola | nucleus | 29.71 | 27.2 |
| CDX82164 | Canola | mitochondrion | 16.32 | 26.9 |
| CDY51614 | Canola | mitochondrion | 15.9 | 26.21 |
| CDY35978 | Canola | mitochondrion, plastid | 15.48 | 25.87 |
| CDY04982 | Canola | mitochondrion | 15.48 | 25.34 |
| CDY14089 | Canola | mitochondrion | 15.48 | 25.34 |
| CDY28003 | Canola | plastid | 15.06 | 25.0 |
| CDX91368 | Canola | plastid | 14.64 | 24.14 |
| CDX74955 | Canola | plastid | 14.64 | 24.14 |
| CDY42466 | Canola | plastid | 14.23 | 22.22 |
| CDY64931 | Canola | plastid | 14.23 | 22.22 |
| CDY43035 | Canola | plastid | 14.23 | 22.22 |
| CDY43820 | Canola | plastid | 14.23 | 21.66 |
| CDY16825 | Canola | plastid | 23.43 | 21.29 |
| CDY49123 | Canola | mitochondrion | 22.59 | 20.3 |
| CDY42426 | Canola | mitochondrion | 20.5 | 20.25 |
| CDX96526 | Canola | mitochondrion | 23.01 | 19.78 |
| CDY31170 | Canola | mitochondrion, nucleus | 10.88 | 19.7 |
| CDX73070 | Canola | mitochondrion | 22.18 | 19.63 |
| CDX83260 | Canola | mitochondrion | 10.88 | 19.4 |
| CDY65478 | Canola | endoplasmic reticulum | 16.32 | 18.75 |
| CDX71070 | Canola | mitochondrion | 11.72 | 18.42 |
| CDY02175 | Canola | mitochondrion | 25.1 | 17.7 |
| CDX87197 | Canola | plastid | 24.27 | 17.63 |
| CDY19589 | Canola | plastid | 15.9 | 10.19 |
| CDY06395 | Canola | nucleus | 15.9 | 9.55 |
Protein Annotations
| MapMan:16.7.2 | Gene3D:3.30.70.330 | Gene3D:4.10.60.10 | GO:A0A078FKX0 | UniProt:A0A078FKX0 | EnsemblPlants:CDY13632 |
| ProteinID:CDY13632 | ProteinID:CDY13632.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 |
| GO:GO:0008270 | EnsemblPlantsGene:GSBRNA2T00078047001 | InterPro:IPR000504 | InterPro:IPR001878 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf |
| PFAM:PF00076 | PFAM:PF00098 | PFscan:PS50102 | PFscan:PS50158 | InterPro:RBD_domain_sf | InterPro:RRM_dom |
| SMART:SM00343 | SMART:SM00360 | SUPFAM:SSF54928 | SUPFAM:SSF57756 | UniParc:UPI0004EEBEAE | InterPro:Znf_CCHC |
| InterPro:Znf_CCHC_sf | SEG:seg | : | : | : | : |
Description
BnaA06g32910DBnaA06g32910D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FKX0]
Coordinates
chrLK032037:+:366302..368667
Molecular Weight (calculated)
26330.8 Da
IEP (calculated)
9.036
GRAVY (calculated)
-1.398
Length
239 amino acids
Sequence
(BLAST)
(BLAST)
001: MSEEVEYRCF IGGLAWSTSD RGLRDAFEKY GHLLEAKVVL DKFSGRSRGF GFITFDEKKA MDEAIAAMNG MDLDGRTITV DKAQPLQGGS GRDHDGDRSR
101: DRGYDRDRSR PSGGRGSGGG DCFKCGKPGH FARECPDESG RGGGGRYSSR DDRYGAKDDR YGAKDDRYSS KDDRYSAKDD RYGAKEDRYG RDGGRDRYGP
201: DRNGDRSGGR SRDGGSRGGP GGERHSRAPY DRPRTGGFH
101: DRGYDRDRSR PSGGRGSGGG DCFKCGKPGH FARECPDESG RGGGGRYSSR DDRYGAKDDR YGAKDDRYSS KDDRYSAKDD RYGAKEDRYG RDGGRDRYGP
201: DRNGDRSGGR SRDGGSRGGP GGERHSRAPY DRPRTGGFH
001: MSEDPEYRCF IGGLAWTTSD RGLRDAFEKY GHLVEAKVVL DKFSGRSRGF GFITFDEKKA MDEAIAAMNG MDLDGRTITV DKAQPHQGGA GRDNDGDRGR
101: DRGYDRDRSR PSGGRGGGDC FKCGKPGHFA RECPSESSRD GGGRFSSKDD RYSSKDDRYG AKDDRYGAKE DRYGAKDDRY SSKDDRYSSK DDRYGSRDGG
201: GSRYGPDRSG ERAGGRSRDG GSRGAPGGER HSRAPYDRPR AGGFH
101: DRGYDRDRSR PSGGRGGGDC FKCGKPGHFA RECPSESSRD GGGRFSSKDD RYSSKDDRYG AKDDRYGAKE DRYGAKDDRY SSKDDRYSSK DDRYGSRDGG
201: GSRYGPDRSG ERAGGRSRDG GSRGAPGGER HSRAPYDRPR AGGFH
Arabidopsis Description
RZ1AGlycine-rich RNA-binding protein RZ1A [Source:UniProtKB/Swiss-Prot;Acc:Q9LIN3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.