Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- plastid 3
- mitochondrion 5
- nucleus 1
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G27330.1 | CDY42827 | AT2G42580.1 | 19000166 |
| AT2G27330.1 | CDY51514 | AT2G42580.1 | 19000166 |
| AT2G27330.1 | CDY55390 | AT2G42580.1 | 19000166 |
| AT2G27330.1 | CDY61202 | AT2G42580.1 | 19000166 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra000516.1-P | Field mustard | mitochondrion | 99.25 | 99.25 |
| CDY31170 | Canola | mitochondrion, nucleus | 93.28 | 94.7 |
| AT2G27330.1 | Thale cress | mitochondrion | 70.15 | 81.03 |
| VIT_06s0080g00870.t01 | Wine grape | plastid | 37.31 | 45.05 |
| KRH27720 | Soybean | endoplasmic reticulum, mitochondrion | 26.87 | 37.11 |
| KRH77758 | Soybean | mitochondrion | 30.6 | 36.28 |
| CDY09244 | Canola | mitochondrion | 26.12 | 33.65 |
| CDY04982 | Canola | mitochondrion | 35.82 | 32.88 |
| EES10764 | Sorghum | mitochondrion | 32.84 | 32.59 |
| Os04t0414300-00 | Rice | mitochondrion | 32.84 | 32.12 |
| CDY14089 | Canola | mitochondrion | 34.33 | 31.51 |
| CDX82066 | Canola | cytosol, nucleus, plastid | 22.39 | 31.25 |
| TraesCS2D01G294000.1 | Wheat | mitochondrion | 31.34 | 30.22 |
| TraesCS2B01G312500.1 | Wheat | mitochondrion | 30.6 | 29.5 |
| TraesCS2A01G296100.1 | Wheat | mitochondrion | 30.6 | 29.5 |
| GSMUA_Achr6P35640_001 | Banana | nucleus | 30.6 | 29.5 |
| HORVU2Hr1G073330.9 | Barley | cytosol, nucleus | 29.85 | 29.41 |
| CDY31588 | Canola | nucleus | 16.42 | 28.21 |
| CDY28003 | Canola | plastid | 26.12 | 24.31 |
| CDX82164 | Canola | mitochondrion | 26.12 | 24.14 |
| CDY35978 | Canola | mitochondrion, plastid | 24.63 | 23.08 |
| CDY46213 | Canola | nucleus | 20.9 | 22.95 |
| CDY42466 | Canola | plastid | 26.12 | 22.88 |
| CDY64931 | Canola | plastid | 25.37 | 22.22 |
| CDY43035 | Canola | plastid | 25.37 | 22.22 |
| CDY43820 | Canola | plastid | 25.37 | 21.66 |
| CDY47311 | Canola | mitochondrion | 23.13 | 21.53 |
| CDY19230 | Canola | mitochondrion | 21.64 | 20.86 |
| CDY51614 | Canola | mitochondrion | 22.39 | 20.69 |
| CDX74955 | Canola | plastid | 22.39 | 20.69 |
| CDX91368 | Canola | plastid | 22.39 | 20.69 |
| CDY47314 | Canola | mitochondrion | 23.13 | 20.67 |
| CDY53035 | Canola | mitochondrion | 23.13 | 20.53 |
| CDY06468 | Canola | mitochondrion | 22.39 | 20.27 |
| CDY08312 | Canola | mitochondrion | 22.39 | 19.61 |
| CDY26743 | Canola | mitochondrion | 21.64 | 19.59 |
| CDY41969 | Canola | cytosol | 17.91 | 18.75 |
| CDX71070 | Canola | mitochondrion | 20.15 | 17.76 |
| CDY65478 | Canola | endoplasmic reticulum | 26.87 | 17.31 |
| CDX71276 | Canola | nucleus | 20.9 | 16.28 |
| CDY59763 | Canola | nucleus | 20.15 | 16.17 |
| CDY12133 | Canola | cytosol | 18.66 | 15.82 |
| CDY42426 | Canola | mitochondrion | 28.36 | 15.7 |
| CDY70933 | Canola | nucleus | 19.4 | 15.48 |
| CDY42616 | Canola | cytosol | 17.91 | 15.29 |
| CDX90323 | Canola | plastid | 17.91 | 14.55 |
| CDY16825 | Canola | plastid | 28.36 | 14.45 |
| CDY49123 | Canola | mitochondrion | 28.36 | 14.29 |
| CDY15876 | Canola | nucleus | 17.91 | 14.2 |
| CDX73070 | Canola | mitochondrion | 28.36 | 14.07 |
| CDX96526 | Canola | mitochondrion | 28.36 | 13.67 |
| CDY72366 | Canola | nucleus | 17.16 | 13.45 |
| CDX87197 | Canola | plastid | 28.36 | 11.55 |
| CDY02175 | Canola | mitochondrion | 29.1 | 11.5 |
| CDX83617 | Canola | nucleus | 19.4 | 11.21 |
| CDY13632 | Canola | nucleus | 19.4 | 10.88 |
| CDY48990 | Canola | nucleus | 19.4 | 10.7 |
| CDY52166 | Canola | nucleus | 18.66 | 10.29 |
| CDY19589 | Canola | plastid | 23.13 | 8.31 |
| CDY06395 | Canola | nucleus | 23.13 | 7.79 |
| CDY11283 | Canola | nucleus | 16.42 | 7.19 |
| CDY34132 | Canola | nucleus | 12.69 | 6.67 |
| CDX80910 | Canola | nucleus | 8.96 | 4.6 |
Protein Annotations
| Gene3D:3.30.70.330 | MapMan:35.1 | GO:A0A078D2B4 | EnsemblPlants:CDX83260 | ProteinID:CDX83260 | ProteinID:CDX83260.1 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 | EnsemblPlantsGene:GSBRNA2T00138811001 | InterPro:IPR000504 | InterPro:IPR012677 |
| InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFscan:PS50102 | PANTHER:PTHR45502 | PANTHER:PTHR45502:SF2 | InterPro:RBD_domain_sf |
| InterPro:RRM_dom | InterPro:RRM_dom_euk | SMART:SM00360 | SMART:SM00361 | SUPFAM:SSF54928 | UniParc:UPI0004EDC25E |
| SEG:seg | : | : | : | : | : |
Description
BnaA03g22460D
Coordinates
chrLK031832:-:706271..707981
Molecular Weight (calculated)
14725.4 Da
IEP (calculated)
8.489
GRAVY (calculated)
-0.240
Length
134 amino acids
Sequence
(BLAST)
(BLAST)
001: MLNHLLYRSH TPSLLFSRAF SSSSSSSSTL FVKGISFSST EETLTQAFSQ YGRVLGVDVL MDDVRCRPKG FAYVTFSSKE EAAKALLELN GQLVDGRVVI
101: LDTTKAVKQN RPDSKPKHAV EEVPNSQHVV TSES
101: LDTTKAVKQN RPDSKPKHAV EEVPNSQHVV TSES
001: MLTQFLYRSF TPLLFSRSFS STLFVKGISF SSTEETLTQA FSQYGQVLKV DVIMDKIRCR PKGFAYVTFS SKEEAEKALL ELNAQLVDGR VVILDTTKAA
101: KHNPPDTKPN HAGGDS
101: KHNPPDTKPN HAGGDS
Arabidopsis Description
At2g27330 [Source:UniProtKB/TrEMBL;Acc:Q1ECN0]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.