Factsheet for Bra000516.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 4
mitochondrion 5
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000267.1-P
Bra004709.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G27330.1	Bra000267.1-P	AT2G42580.1	19000166
AT2G27330.1	Bra004709.1-P	AT2G42580.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX83260	Canola	mitochondrion	99.25	99.25
AT2G27330.1	Thale cress	mitochondrion	70.15	81.03
VIT_06s0080g00870.t01	Wine grape	plastid	37.31	45.05
KRH27720	Soybean	endoplasmic reticulum, mitochondrion	26.87	37.11
KRH77758	Soybean	mitochondrion	30.6	36.28
Bra028739.1-P	Field mustard	mitochondrion	36.57	33.56
EES10764	Sorghum	mitochondrion	32.84	32.59
Os04t0414300-00	Rice	mitochondrion	32.84	32.12
Bra020279.1-P	Field mustard	mitochondrion	26.12	31.82
TraesCS2D01G294000.1	Wheat	mitochondrion	31.34	30.22
TraesCS2B01G312500.1	Wheat	mitochondrion	30.6	29.5
TraesCS2A01G296100.1	Wheat	mitochondrion	30.6	29.5
GSMUA_Achr6P35640_001	Banana	nucleus	30.6	29.5
HORVU2Hr1G073330.9	Barley	cytosol, nucleus	29.85	29.41
Bra002976.1-P	Field mustard	mitochondrion	19.4	25.0
Bra029692.1-P	Field mustard	mitochondrion	25.37	23.78
Bra029020.1-P	Field mustard	plastid	25.37	22.22
Bra008100.1-P	Field mustard	cytosol	13.43	21.95
Bra013997.1-P	Field mustard	mitochondrion	23.13	21.38
Bra005189.1-P	Field mustard	plastid	22.39	20.83
Bra025674.1-P	Field mustard	mitochondrion	21.64	20.0
Bra037056.1-P	Field mustard	mitochondrion	22.39	20.0
Bra008020.1-P	Field mustard	endoplasmic reticulum	26.87	17.31
Bra001972.1-P	Field mustard	nucleus	20.9	17.07
Bra031210.1-P	Field mustard	nucleus	19.4	15.48
Bra011869.1-P	Field mustard	cytosol	17.91	14.81
Bra010693.1-P	Field mustard	nucleus	17.91	14.55
Bra035944.1-P	Field mustard	plastid	28.36	14.45
Bra008142.1-P	Field mustard	mitochondrion	28.36	14.39
Bra030284.1-P	Field mustard	nucleus	17.91	14.29
Bra014000.1-P	Field mustard	mitochondrion	23.13	13.96
Bra015926.1-P	Field mustard	mitochondrion	28.36	13.33
Bra003841.1-P	Field mustard	cytosol, nucleus, plastid	25.37	13.23
Bra012986.1-P	Field mustard	mitochondrion	29.1	12.79
Bra025205.1-P	Field mustard	nucleus	19.4	11.21
Bra032933.1-P	Field mustard	nucleus	19.4	10.7
Bra031244.1-P	Field mustard	plastid	23.13	8.31
Bra005798.1-P	Field mustard	nucleus	16.42	7.19

Protein Annotations

Gene3D:3.30.70.330	MapMan:35.1	EnsemblPlantsGene:Bra000516	EnsemblPlants:Bra000516.1	EnsemblPlants:Bra000516.1-P	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	UniProt:M4C8I8
InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR45502	PANTHER:PTHR45502:SF2	InterPro:RBD_domain_sf
InterPro:RRM_dom	InterPro:RRM_dom_euk	SMART:SM00360	SMART:SM00361	SUPFAM:SSF54928	UniParc:UPI000254002F
SEG:seg	:	:	:	:	:

Description

AT2G27330 (E=3e-038) | RNA recognition motif (RRM)-containing protein

Coordinates

chrA03:+:11529497..11530832

Molecular Weight (calculated)

14739.4 Da

IEP (calculated)

8.489

GRAVY (calculated)

-0.240

Length

134 amino acids

Sequence
(BLAST)

001: MLNHLLYRSH TPSLLFSRAF SSSSSSSSTL FVKGISFSST EETLTQAFSQ YGRVLGVDVL MDEVRCRPKG FAYVTFSSKE EAAKALLELN GQLVDGRVVI
101: LDTTKAVKQN RPDSKPKHAV EEVPNSQHVV TSES

Best Arabidopsis Sequence Match ( AT2G27330.1 )
(BLAST)

001: MLTQFLYRSF TPLLFSRSFS STLFVKGISF SSTEETLTQA FSQYGQVLKV DVIMDKIRCR PKGFAYVTFS SKEEAEKALL ELNAQLVDGR VVILDTTKAA
101: KHNPPDTKPN HAGGDS

Arabidopsis Description

At2g27330 [Source:UniProtKB/TrEMBL;Acc:Q1ECN0]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.