Factsheet for Bra003841.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 3
mitochondrion 2
plastid 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX82066	Canola	cytosol, nucleus, plastid	31.13	83.33
Bra008100.1-P	Field mustard	cytosol	24.51	76.83
AT1G73530.1	Thale cress	plastid	49.42	70.17
GSMUA_Achr5P15860_001	Banana	plastid	35.8	54.12
Solyc09g011210.2.1	Tomato	plastid	27.63	53.79
KRH09475	Soybean	plastid	32.3	46.11
Zm00001d026016_P002	Maize	plastid	26.46	45.33
KXG26990	Sorghum	plastid	25.68	44.9
PGSC0003DMT400022733	Potato	plastid	28.02	44.17
VIT_17s0053g00760.t01	Wine grape	plastid	26.46	42.77
KRH38934	Soybean	plastid	25.29	42.21
Bra002976.1-P	Field mustard	mitochondrion	16.34	40.38
Os04t0583800-01	Rice	plastid	14.79	32.2
Bra020279.1-P	Field mustard	mitochondrion	13.62	31.82
Bra029020.1-P	Field mustard	plastid	18.68	31.37
Bra005189.1-P	Field mustard	plastid	17.51	31.25
Bra028739.1-P	Field mustard	mitochondrion	14.79	26.03
Bra000516.1-P	Field mustard	mitochondrion	13.23	25.37
Bra025674.1-P	Field mustard	mitochondrion	14.01	24.83
Bra013997.1-P	Field mustard	mitochondrion	13.23	23.45
Bra037056.1-P	Field mustard	mitochondrion	13.23	22.67
Bra029692.1-P	Field mustard	mitochondrion	12.06	21.68
Bra011869.1-P	Field mustard	cytosol	11.67	18.52
Bra030284.1-P	Field mustard	nucleus	12.06	18.45
Bra001972.1-P	Field mustard	nucleus	11.67	18.29
Bra010693.1-P	Field mustard	nucleus	11.67	18.18
Bra031210.1-P	Field mustard	nucleus	11.67	17.86
Bra014000.1-P	Field mustard	mitochondrion	13.23	15.32
Bra008020.1-P	Field mustard	endoplasmic reticulum	11.28	13.94
Bra025205.1-P	Field mustard	nucleus	11.28	12.5
Bra032933.1-P	Field mustard	nucleus	11.67	12.35
Bra008142.1-P	Field mustard	mitochondrion	12.45	12.12
Bra031244.1-P	Field mustard	plastid	17.12	11.8
Bra015926.1-P	Field mustard	mitochondrion	12.84	11.58
Bra035944.1-P	Field mustard	plastid	11.67	11.41
Bra012986.1-P	Field mustard	mitochondrion	11.67	9.84
Bra005798.1-P	Field mustard	nucleus	10.51	8.82

Protein Annotations

Gene3D:1.10.110.10	Gene3D:3.30.70.330	MapMan:35.1	InterPro:Bifun_inhib/LTP/seed_sf	InterPro:Bifunc_inhib/LTP/seed_store	EnsemblPlantsGene:Bra003841
EnsemblPlants:Bra003841.1	EnsemblPlants:Bra003841.1-P	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488
InterPro:IPR000504	InterPro:IPR012677	UniProt:M4CI08	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF14368
PFscan:PS50102	PANTHER:PTHR33044	PANTHER:PTHR33044:SF11	InterPro:RBD_domain_sf	InterPro:RRM_dom	InterPro:RRM_dom_euk
SMART:SM00360	SMART:SM00361	SMART:SM00499	SUPFAM:SSF47699	SUPFAM:SSF54928	UniParc:UPI0002541728
SEG:seg	:	:	:	:	:

Description

AT1G73530 (E=1e-057) | RNA recognition motif (RRM)-containing protein

Coordinates

chrA07:+:15310280..15312768

Molecular Weight (calculated)

28151.1 Da

IEP (calculated)

9.420

GRAVY (calculated)

-0.290

Length

257 amino acids

Sequence
(BLAST)

001: MSCMQKLMSC QPYIHAVNPP PPPSCCGPMK EIVVKDAPCL CAVFNDPAIL KTLNLTKENA LDLPKACGAN PDISLCSKTA SLPPTAPPGP TSVTTSCCFS
101: SSVYFRCWRG RINVGTVVNS ARRRHDVGGL LVSGCLSSPD SSSPPSSISG PKTKLYVSGL SFRTTEDNLR NVFEQFGKLT LVNLVMDKVA NRPRGFAFLR
201: YETEEESMKA IQGMHGKFLD GRVIFVEEAK PKSDLQRAKP RSDFNKAQTK PRTFRTW

Best Arabidopsis Sequence Match ( AT1G73530.1 )
(BLAST)

001: MAISLGRVVV PSCTISGDRL FIPNFSAICS VSCGRINVGT GVISARRRRD IGGVLISSCL STDSSSSPPS SSSGPKTKLY VSGLSFRTTE DTLRDTFEQF
101: GNLIHMNMVM DKVANRPKGF AFLRYETEEE AMKAIQGMHG KFLDGRVIFV EEAKTRSDMS RAKPRRDFPK PQSKPRTFRT W

Arabidopsis Description

ORRM6Organelle RRM domain-containing protein 6, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9FX45]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.