Factsheet for Bra032933.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY48990	Canola	nucleus	100.0	100.0
Bra025205.1-P	Field mustard	nucleus	88.89	93.1
AT3G26420.1	Thale cress	nucleus	82.72	82.04
KRH42209	Soybean	endoplasmic reticulum	53.09	73.3
PGSC0003DMT400076497	Potato	nucleus	60.49	71.71
KRH58335	Soybean	nucleus	58.85	68.75
KXG37189	Sorghum	nucleus	55.56	67.84
PGSC0003DMT400045627	Potato	nucleus	59.67	67.76
Os03t0836200-03	Rice	nucleus	56.79	67.32
Zm00001d034768_P005	Maize	nucleus	56.38	66.83
KXG24163	Sorghum	nucleus	55.97	62.39
TraesCS4A01G355700.1	Wheat	nucleus	53.09	61.14
TraesCS5D01G516500.1	Wheat	nucleus	55.56	60.81
TraesCS5B01G516400.1	Wheat	nucleus	54.73	60.73
Solyc10g047130.1.1	Tomato	nucleus	59.26	60.25
TraesCS7B01G227500.2	Wheat	nucleus	53.91	56.96
TraesCS7D01G323600.1	Wheat	nucleus	53.91	56.96
HORVU7Hr1G078140.5	Barley	nucleus	53.91	56.96
TraesCS7A01G326800.1	Wheat	nucleus	54.32	55.7
Solyc01g104840.2.1	Tomato	nucleus	46.91	51.12
VIT_18s0166g00180.t01	Wine grape	mitochondrion	59.67	50.88
Bra031210.1-P	Field mustard	nucleus	32.51	47.02
Bra030284.1-P	Field mustard	nucleus	31.69	45.83
Bra010693.1-P	Field mustard	nucleus	30.86	45.45
Bra011869.1-P	Field mustard	cytosol	30.04	45.06
HORVU5Hr1G118010.1	Barley	mitochondrion, nucleus	56.38	43.91
Bra001972.1-P	Field mustard	nucleus	28.4	42.07
GSMUA_Achr5P26170_001	Banana	nucleus, peroxisome, plasma membrane	28.81	41.67
GSMUA_Achr3P22540_001	Banana	nucleus, peroxisome, plasma membrane	32.1	38.05
GSMUA_Achr8P07840_001	Banana	mitochondrion, nucleus, plasma membrane	29.22	37.17
Bra037056.1-P	Field mustard	mitochondrion	21.81	35.33
Bra013997.1-P	Field mustard	mitochondrion	20.16	33.79
Bra025674.1-P	Field mustard	mitochondrion	19.75	33.1
Bra002976.1-P	Field mustard	mitochondrion	13.99	32.69
Bra005798.1-P	Field mustard	nucleus	34.57	27.45
Bra020279.1-P	Field mustard	mitochondrion	12.35	27.27
Bra028739.1-P	Field mustard	mitochondrion	15.64	26.03
Bra014000.1-P	Field mustard	mitochondrion	23.05	25.23
Bra005189.1-P	Field mustard	plastid	14.81	25.0
Bra029692.1-P	Field mustard	mitochondrion	14.4	24.48
Bra008100.1-P	Field mustard	cytosol	8.23	24.39
Bra029020.1-P	Field mustard	plastid	14.4	22.88
Bra035944.1-P	Field mustard	plastid	24.28	22.43
Bra012986.1-P	Field mustard	mitochondrion	27.57	21.97
Bra008142.1-P	Field mustard	mitochondrion	23.05	21.21
Bra015926.1-P	Field mustard	mitochondrion	23.46	20.0
Bra000516.1-P	Field mustard	mitochondrion	10.7	19.4
Bra008020.1-P	Field mustard	endoplasmic reticulum	15.64	18.27
Bra003841.1-P	Field mustard	cytosol, nucleus, plastid	12.35	11.67
Bra031244.1-P	Field mustard	plastid	15.23	9.92

Protein Annotations

MapMan:16.7.2	Gene3D:3.30.70.330	Gene3D:4.10.60.10	EnsemblPlantsGene:Bra032933	EnsemblPlants:Bra032933.1	EnsemblPlants:Bra032933.1-P
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0008270	InterPro:IPR000504
InterPro:IPR001878	InterPro:IPR012677	UniProt:M4EVV0	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF00098
PFscan:PS50102	PFscan:PS50158	PANTHER:PTHR45429	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00343
SMART:SM00360	SUPFAM:SSF54928	SUPFAM:SSF57756	UniParc:UPI0002545999	InterPro:Znf_CCHC	InterPro:Znf_CCHC_sf
SEG:seg	:	:	:	:	:

Description

AT3G26420 (E=9e-048) ATRZ-1A | ATRZ-1A; RNA binding / nucleotide binding

Coordinates

chrA02:-:22433065..22433936

Molecular Weight (calculated)

26655.0 Da

IEP (calculated)

8.564

GRAVY (calculated)

-1.468

Length

243 amino acids

Sequence
(BLAST)

001: MSEEAEYRCF IGGLAWATSD RGLRDAFEKY GHLTEAKVVL DKFSGRSRGF GFVTFDEKKA MDEAIAAMNG MDLDGRTITV DKAQPQGASG RDHDGDRSRD
101: RDRDRGYDRD RSRPSGGGRG GSGGGDCFKC GKPGHFAREC PDESGRGGGG GGRYSSRDDR YSSKDDRYGG KDDRYSSKDD RYSAKDDRYG AKEDRYGGRD
201: RYGPDRSGER SGGRSRDDGS RGGSGGERHG RAPYDRPRDG GFH

Best Arabidopsis Sequence Match ( AT3G26420.1 )
(BLAST)

001: MSEDPEYRCF IGGLAWTTSD RGLRDAFEKY GHLVEAKVVL DKFSGRSRGF GFITFDEKKA MDEAIAAMNG MDLDGRTITV DKAQPHQGGA GRDNDGDRGR
101: DRGYDRDRSR PSGGRGGGDC FKCGKPGHFA RECPSESSRD GGGRFSSKDD RYSSKDDRYG AKDDRYGAKE DRYGAKDDRY SSKDDRYSSK DDRYGSRDGG
201: GSRYGPDRSG ERAGGRSRDG GSRGAPGGER HSRAPYDRPR AGGFH

Arabidopsis Description

RZ1AGlycine-rich RNA-binding protein RZ1A [Source:UniProtKB/Swiss-Prot;Acc:Q9LIN3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.