Factsheet for Bra035944.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 4
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX87197	Canola	plastid	95.06	75.99
Bra012986.1-P	Field mustard	mitochondrion	86.69	74.75
AT5G61030.1	Thale cress	mitochondrion	78.33	66.67
GSMUA_Achr9P07090_001	Banana	mitochondrion	47.91	52.94
VIT_17s0000g07330.t01	Wine grape	plastid	52.47	49.82
Bra013997.1-P	Field mustard	mitochondrion	27.38	49.66
Bra037056.1-P	Field mustard	mitochondrion	28.14	49.33
Bra008142.1-P	Field mustard	mitochondrion	48.29	48.11
EES16016	Sorghum	mitochondrion	44.87	47.2
Bra030284.1-P	Field mustard	nucleus	30.04	47.02
Bra015926.1-P	Field mustard	mitochondrion	50.95	47.02
GSMUA_Achr4P03230_001	Banana	mitochondrion	45.25	46.48
TraesCS3D01G424100.1	Wheat	mitochondrion	38.4	46.12
TraesCS3A01G428400.1	Wheat	mitochondrion	39.16	45.58
Os12t0502200-01	Rice	mitochondrion	44.11	44.96
TraesCS3B01G465800.1	Wheat	mitochondrion	39.16	44.59
Zm00001d041750_P001	Maize	mitochondrion	43.73	44.06
KRH56813	Soybean	mitochondrion	45.63	43.8
PGSC0003DMT400064758	Potato	mitochondrion	41.44	43.43
KRH03133	Soybean	nucleus	45.25	43.27
Bra025674.1-P	Field mustard	mitochondrion	23.57	42.76
Bra001972.1-P	Field mustard	nucleus	26.62	42.68
Solyc02g066930.2.1	Tomato	nucleus	34.98	42.59
Bra010693.1-P	Field mustard	nucleus	26.62	42.42
Bra031210.1-P	Field mustard	nucleus	26.62	41.67
HORVU5Hr1G110370.1	Barley	mitochondrion	45.63	40.96
TraesCS5D01G473100.1	Wheat	mitochondrion	47.15	40.52
TraesCS5B01G470700.1	Wheat	mitochondrion	47.15	40.39
TraesCS5A01G460900.1	Wheat	mitochondrion	46.39	40.0
Zm00001d023734_P003	Maize	nucleus, plastid	43.35	39.72
Bra011869.1-P	Field mustard	cytosol	24.33	39.51
Os07t0602600-01	Rice	mitochondrion	34.6	38.24
Os10t0321700-01	Rice	mitochondrion	46.01	38.17
HORVU3Hr1G094330.2	Barley	mitochondrion	42.59	36.6
TraesCS2B01G203200.1	Wheat	mitochondrion	43.35	35.74
Zm00001d022065_P001	Maize	mitochondrion	41.83	35.71
TraesCS2D01G184200.1	Wheat	mitochondrion	44.11	35.69
KXG36643	Sorghum	mitochondrion	42.21	35.13
Bra014000.1-P	Field mustard	mitochondrion	29.28	34.68
PGSC0003DMT400003685	Potato	nucleus	39.92	34.65
Bra029692.1-P	Field mustard	mitochondrion	18.25	33.57
Solyc02g088790.2.1	Tomato	extracellular, plastid	46.39	32.71
Bra020279.1-P	Field mustard	mitochondrion	12.93	30.91
Bra028739.1-P	Field mustard	mitochondrion	17.11	30.82
Bra002976.1-P	Field mustard	mitochondrion	12.17	30.77
Bra008020.1-P	Field mustard	endoplasmic reticulum	23.57	29.81
Bra005189.1-P	Field mustard	plastid	15.59	28.47
Bra000516.1-P	Field mustard	mitochondrion	14.45	28.36
Bra032933.1-P	Field mustard	nucleus	22.43	24.28
Bra029020.1-P	Field mustard	plastid	14.07	24.18
Bra025205.1-P	Field mustard	nucleus	20.91	23.71
Bra008100.1-P	Field mustard	cytosol	6.08	19.51
KRH54698	Soybean	plastid	48.67	18.99
Bra005798.1-P	Field mustard	nucleus	19.77	16.99
TraesCS2A01G176700.1	Wheat	mitochondrion	41.06	14.73
Bra003841.1-P	Field mustard	cytosol, nucleus, plastid	11.41	11.67
Bra031244.1-P	Field mustard	plastid	13.31	9.38

Protein Annotations

EnsemblPlants:Bra035944.1	EnsemblPlants:Bra035944.1-P	EnsemblPlantsGene:Bra035944	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf
InterPro:RRM_dom	PANTHER:PTHR45502	PFAM:PF00076	PFscan:PS50102	SEG:seg	SMART:SM00360
SUPFAM:SSF54928	UniParc:UPI0002541FB9	UniProt:M4F4E4	MapMan:16.12.5.2	:	:

Description

AT5G61030 (E=4e-049) GR-RBP3 | GR-RBP3 (glycine-rich RNA-binding protein 3); ATP binding / RNA binding

Coordinates

chrA09:+:2804710..2805821

Molecular Weight (calculated)

25908.1 Da

IEP (calculated)

4.354

GRAVY (calculated)

-0.460

Length

263 amino acids

Sequence
(BLAST)

001: MAFLSKFGNI LKQTNANGSL SSPSLFQAIR CMSSSKLFIG GMEYGMNEDS LREAFSKYGE VVETRVILDR ETGRSRGFGF VTFTSTEAAS SAIQALDGQD
101: LHGRIVKVNY AHDRTSGGGG YGGGGYGGGY GGGGGYGGGS GGYGGGVAGG YGTSGGYGSS GYGESSTASA AGAVGGYNGS GGYGEGSTAN AGAVGGYGSD
201: NAYGSNNGGF AGENQVGGDN SQFSGENTQF GGGGQSGGET QFGGMENGAV GDFEDDTDVA KRA

Best Arabidopsis Sequence Match ( AT5G61030.2 )
(BLAST)

001: MAFLSKFGNI LKQTTNKQLN AQVSLSSPSL FQAIRCMSSS KLFIGGMAYS MDEDSLREAF TKYGEVVDTR VILDRETGRS RGFGFVTFTS SEAASSAIQA
101: LDGRDLHGRV VKVNYANDRT SGGGFGGGGY GGGGGGYGGS GGYGGGAGGY GGSGGYGGGA GGYGGNSGGG YGGNAAGGYG GSGAGGYGGD ATGHGGAGGG
201: YGSSGGFGSS GNTYGEGSSA SAGAVGDYNG SSGYGSANTY GSSNGGFAGD SQFGGSPVGN SSQFGGDNTQ FTAGGQFGGE DQFGSMEKSE TKMEDGPIGG
301: EFEDVAKRA

Arabidopsis Description

RBG3GR-RBP3 [Source:UniProtKB/TrEMBL;Acc:A0A178UBT5]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.