CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 7

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d022065_P001	Maize	mitochondrion	78.8	80.84
Os07t0602600-01	Rice	mitochondrion	38.61	51.26
TraesCS2B01G203200.1	Wheat	mitochondrion	49.37	48.9
EES01954	Sorghum	plastid	22.47	48.3
EES16016	Sorghum	mitochondrion	37.97	48.0
GSMUA_Achr9P07090_001	Banana	mitochondrion	35.44	47.06
TraesCS2D01G184200.1	Wheat	mitochondrion	48.1	46.77
GSMUA_Achr4P03230_001	Banana	mitochondrion	37.66	46.48
Solyc02g066930.2.1	Tomato	nucleus	30.7	44.91
EES16438	Sorghum	nucleus	23.1	44.24
CDY16825	Canola	plastid	35.76	42.97
KXG37870	Sorghum	nucleus	23.1	42.94
VIT_17s0000g07330.t01	Wine grape	plastid	37.03	42.24
Bra035944.1-P	Field mustard	plastid	35.13	42.21
KRH03133	Soybean	nucleus	35.76	41.09
PGSC0003DMT400064758	Potato	mitochondrion	32.59	41.04
Bra012986.1-P	Field mustard	mitochondrion	39.24	40.66
KRH56813	Soybean	mitochondrion	34.81	40.15
AT5G61030.1	Thale cress	mitochondrion	38.61	39.48
KRH01278	Soybean	mitochondrion, nucleus, plastid	29.43	38.11
KXG36665	Sorghum	mitochondrion	12.66	38.1
KRH45033	Soybean	nucleus, plastid	28.48	36.73
PGSC0003DMT400003685	Potato	nucleus	33.86	35.31
EER97356	Sorghum	plastid	14.56	35.11
CDY02175	Canola	mitochondrion	37.66	35.1
EES10764	Sorghum	mitochondrion	14.87	34.81
CDX87197	Canola	plastid	34.49	33.13
OQU88096	Sorghum	cytosol, mitochondrion, nucleus	6.65	32.31
EES14515	Sorghum	plastid	14.24	32.14
Solyc02g088790.2.1	Tomato	extracellular, plastid	37.03	31.37
KXG32985	Sorghum	cytosol, mitochondrion, nucleus	6.65	31.34
EER92461	Sorghum	plastid	15.51	28.99
KXG37189	Sorghum	nucleus	17.41	27.64
KXG24163	Sorghum	nucleus	17.72	25.69
EES02151	Sorghum	mitochondrion, plastid	11.71	25.34
KXG26990	Sorghum	plastid	11.71	25.17
OQU88590	Sorghum	nucleus	22.78	23.92
KXG37841	Sorghum	nucleus	22.47	22.47
TraesCS2A01G176700.1	Wheat	mitochondrion	44.62	19.24
KRH54698	Soybean	plastid	37.66	17.66
KXG30823	Sorghum	plastid	12.97	10.22

Protein Annotations

MapMan:16.12.5.2	Gene3D:3.30.70.330	UniProt:A0A1B6QFH0	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	ProteinID:KXG36642.1	EnsemblPlants:KXG36643	ProteinID:KXG36643
ProteinID:KXG36643.1	InterPro:Nucleotide-bd_a/b_plait_sf	ProteinID:OQU90212.1	PFAM:PF00076	PRINTS:PR01228	PFscan:PS50102
PANTHER:PTHR44202	PANTHER:PTHR44202:SF2	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	EnsemblPlantsGene:SORBI_3002G366800
SUPFAM:SSF54928	UniParc:UPI0003C7060E	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr2:-:72650377..72653880

Molecular Weight (calculated)

31087.5 Da

IEP (calculated)

5.709

GRAVY (calculated)

-0.602

Length

316 amino acids

Sequence
(BLAST)

001: MAFVSRIGNA LRRTSVSNSA PLLQPVRCMS SSKLFVGGLS YATDETTLKN VFSAYGNVLE ARIITDRESG RSKGFGFITY TSTEEASAAV TSMDGKELQG
101: RSIRVDHAND RAGGIRGGGG FGSGGGYGGG GGYPSGGYGG GGGSGYSSGG GGGYSSGGYA GNGGYSVGSG SGNGGNYNNA SGGGYAGNDG YNDAAASGGY
201: ANNMSSGRYN TTGSSDGNTA GYNSSPNTYG ASNYGAANYN TGSSSGGTSG EFGGGFSGGH FGGNNFGNVT GGGYSGSSNT GGFYGGGASY GANKPQYNDH
301: DDLMGDFFDK EVAESK

Best Arabidopsis Sequence Match ( AT5G61030.2 )
(BLAST)

001: MAFLSKFGNI LKQTTNKQLN AQVSLSSPSL FQAIRCMSSS KLFIGGMAYS MDEDSLREAF TKYGEVVDTR VILDRETGRS RGFGFVTFTS SEAASSAIQA
101: LDGRDLHGRV VKVNYANDRT SGGGFGGGGY GGGGGGYGGS GGYGGGAGGY GGSGGYGGGA GGYGGNSGGG YGGNAAGGYG GSGAGGYGGD ATGHGGAGGG
201: YGSSGGFGSS GNTYGEGSSA SAGAVGDYNG SSGYGSANTY GSSNGGFAGD SQFGGSPVGN SSQFGGDNTQ FTAGGQFGGE DQFGSMEKSE TKMEDGPIGG
301: EFEDVAKRA

Arabidopsis Description

RBG3GR-RBP3 [Source:UniProtKB/TrEMBL;Acc:A0A178UBT5]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.