Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 1
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d041246_P001 | Maize | nucleus | 83.03 | 94.48 |
| Zm00001d031168_P001 | Maize | plastid | 88.48 | 94.19 |
| Os12t0632000-01 | Rice | nucleus | 76.97 | 78.4 |
| Solyc10g051390.1.1 | Tomato | nucleus | 52.73 | 73.73 |
| TraesCS5B01G013200.1 | Wheat | nucleus | 73.94 | 73.05 |
| TraesCS5A01G015000.1 | Wheat | nucleus | 75.15 | 72.94 |
| TraesCS5D01G020900.1 | Wheat | plastid | 75.76 | 71.84 |
| KXG37870 | Sorghum | nucleus | 73.94 | 71.76 |
| GSMUA_Achr7P27650_001 | Banana | nucleus | 56.97 | 70.68 |
| CDY42616 | Canola | cytosol | 64.85 | 68.15 |
| VIT_03s0063g02610.t01 | Wine grape | nucleus | 66.67 | 67.9 |
| Bra001972.1-P | Field mustard | nucleus | 67.27 | 67.68 |
| GSMUA_Achr3P30570_001 | Banana | plasma membrane | 69.7 | 67.65 |
| PGSC0003DMT400084266 | Potato | extracellular | 64.85 | 66.46 |
| GSMUA_Achr4P14550_001 | Banana | nucleus | 63.64 | 66.46 |
| GSMUA_Achr8P05200_001 | Banana | cytosol | 62.42 | 66.45 |
| KRH29453 | Soybean | nucleus | 56.36 | 66.43 |
| KRH29451 | Soybean | nucleus | 68.48 | 66.08 |
| CDY59763 | Canola | nucleus | 66.67 | 65.87 |
| CDX71276 | Canola | nucleus | 68.48 | 65.7 |
| CDY46213 | Canola | nucleus | 48.48 | 65.57 |
| CDY72366 | Canola | nucleus | 67.88 | 65.5 |
| Bra030284.1-P | Field mustard | nucleus | 66.67 | 65.48 |
| CDY15876 | Canola | nucleus | 66.67 | 65.09 |
| CDY70933 | Canola | nucleus | 66.06 | 64.88 |
| Bra031210.1-P | Field mustard | nucleus | 66.06 | 64.88 |
| CDX90323 | Canola | plastid | 64.85 | 64.85 |
| Bra010693.1-P | Field mustard | nucleus | 64.85 | 64.85 |
| Solyc10g051380.1.1 | Tomato | nucleus | 50.91 | 64.62 |
| TraesCS6D01G199100.1 | Wheat | nucleus | 60.61 | 64.52 |
| KRH29452 | Soybean | nucleus | 60.61 | 64.1 |
| CDY41969 | Canola | cytosol | 49.7 | 64.06 |
| Solyc01g109660.2.1 | Tomato | extracellular | 67.88 | 64.0 |
| AT4G39260.1 | Thale cress | nucleus | 65.45 | 63.91 |
| PGSC0003DMT400001879 | Potato | cytosol | 67.88 | 63.64 |
| Bra011869.1-P | Field mustard | cytosol | 62.42 | 63.58 |
| TraesCS6B01G246400.1 | Wheat | nucleus | 61.82 | 62.96 |
| PGSC0003DMT400084258 | Potato | nucleus | 63.03 | 62.65 |
| PGSC0003DMT400083014 | Potato | nucleus | 63.03 | 62.65 |
| PGSC0003DMT400084290 | Potato | nucleus | 63.03 | 62.65 |
| AT2G21660.1 | Thale cress | nucleus | 66.67 | 62.5 |
| TraesCS6A01G216500.1 | Wheat | nucleus | 61.21 | 62.35 |
| HORVU6Hr1G055440.1 | Barley | nucleus | 61.21 | 62.35 |
| KRH51528 | Soybean | nucleus | 67.88 | 61.54 |
| CDY12133 | Canola | cytosol | 58.18 | 60.76 |
| KRH29454 | Soybean | nucleus | 61.82 | 60.0 |
| KRH60842 | Soybean | mitochondrion | 64.85 | 57.84 |
| Os03t0670700-01 | Rice | nucleus | 67.27 | 56.63 |
| HORVU5Hr1G002150.1 | Barley | nucleus | 57.58 | 54.91 |
| HORVU5Hr1G089190.1 | Barley | endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole | 27.27 | 45.45 |
| EES01954 | Sorghum | plastid | 36.36 | 40.82 |
| KXG37189 | Sorghum | nucleus | 48.48 | 40.2 |
| KXG24163 | Sorghum | nucleus | 41.82 | 31.65 |
| EES16016 | Sorghum | mitochondrion | 46.67 | 30.8 |
| OQU88096 | Sorghum | cytosol, mitochondrion, nucleus | 12.12 | 30.77 |
| EER97356 | Sorghum | plastid | 23.64 | 29.77 |
| KXG32985 | Sorghum | cytosol, mitochondrion, nucleus | 11.52 | 28.36 |
| EES10764 | Sorghum | mitochondrion | 22.42 | 27.41 |
| EES14515 | Sorghum | plastid | 23.03 | 27.14 |
| KXG36665 | Sorghum | mitochondrion | 16.36 | 25.71 |
| OQU88590 | Sorghum | nucleus | 44.24 | 24.25 |
| KXG26990 | Sorghum | plastid | 21.21 | 23.81 |
| KXG37841 | Sorghum | nucleus | 45.45 | 23.73 |
| EES02151 | Sorghum | mitochondrion, plastid | 20.61 | 23.29 |
| KXG36643 | Sorghum | mitochondrion | 44.24 | 23.1 |
| EER92461 | Sorghum | plastid | 23.64 | 23.08 |
| KXG30823 | Sorghum | plastid | 24.24 | 9.98 |
Protein Annotations
| MapMan:16.7.2 | Gene3D:3.30.70.330 | EntrezGene:8071524 | UniProt:C5YSY6 | EnsemblPlants:EES16438 | ProteinID:EES16438 |
| ProteinID:EES16438.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | InterPro:IPR000504 |
| InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFscan:PS50102 | PANTHER:PTHR44202 | InterPro:RBD_domain_sf |
| InterPro:RRM_dom | SMART:SM00360 | EnsemblPlantsGene:SORBI_3008G185900 | SUPFAM:SSF54928 | unigene:Sbi.7459 | UniParc:UPI0001A88271 |
| RefSeq:XP_002442600.1 | SEG:seg | : | : | : | : |
Description
hypothetical protein
Coordinates
chr8:+:62029745..62031523
Molecular Weight (calculated)
16100.2 Da
IEP (calculated)
7.339
GRAVY (calculated)
-0.727
Length
165 amino acids
Sequence
(BLAST)
(BLAST)
001: MAASDVEYRC FVGGLAWATD DNSLHSAFST YGEVLESKII LDRETQRSRG FGFVTFSTEE AMRSAIEGMN GKELDGRNIT VNEAQSRGGR GGGGGGGYGG
101: GRGGGGGYGR RDGGGGGYGG GGGGYGGGRG GYGGGGGGYG GGGGGYGGGS RGGGGYGNSD GNWRN
101: GRGGGGGYGR RDGGGGGYGG GGGGYGGGRG GYGGGGGGYG GGGGGYGGGS RGGGGYGNSD GNWRN
001: MASGDVEYRC FVGGLAWATD DRALETAFAQ YGDVIDSKII NDRETGRSRG FGFVTFKDEK AMKDAIEGMN GQDLDGRSIT VNEAQSRGSG GGGGHRGGGS
101: YGGGGGRREG GGGYSGGGGG YSSRGGGGGS YGGGRREGGG GYGGGEGGGY GGSGGGGGW
101: YGGGGGRREG GGGYSGGGGG YSSRGGGGGS YGGGRREGGG GYGGGEGGGY GGSGGGGGW
Arabidopsis Description
RBG7Glycine-rich RNA-binding protein 7 [Source:UniProtKB/Swiss-Prot;Acc:Q03250]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.